RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CR1P17927 2039 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 KIAA2026Q5HYC2 2103 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 IGHV4-30-2A0A087WSY4 118 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 A0A1B0GW55 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A10PA6NDY2 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A18PA6NE21 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A16PA6NEW6 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A20PA6NIJ5 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 NKX6-3A6NJ46 265 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A8PA6NJQ4 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A7PA6NKC0 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A22PA8MWA6 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A12PA8MX19 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A5PA8MXJ8 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A23PA8MXZ1 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM25AB3EWG3 89 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM25CB3EWG5 89 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM25GB3EWG6 89 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 TNFRSF13BO14836 293 aaPredicted RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 TMPRSS2O15393 492 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 SOCS1O15524 211 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ADAM20O43506 726 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 NDUFA2O43678 99 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 OR2H2O95918 312 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 EIF4EP06730 217 aaKnown RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 CHRM2P08172 466 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A15PP0C7V4 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A13PP0C7W8 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A14PP0C7W9 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM90A24PP0C7X0 464 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L2P0CJ85 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L3P0CJ86 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L4P0CJ87 422 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L5P0CJ88 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L6P0CJ89 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L7P0CJ90 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ZNF44P15621 663 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ELK1P19419 428 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 CPT2P23786 658 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 BLVRBP30043 206 aaPredicted RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 NR4A2P43354 598 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 PITPNBP48739 271 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 COL10A1Q03692 680 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM189A2Q15884 450 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 MPV17LQ2QL34 196 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 TMEM155Q4W5P6 130 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ATAD3CQ5T2N8 411 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ATPAF1Q5TC12 328 aaPredicted RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4L9Q6RFH8 374 aaPredicted RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 ZNF788Q6ZQV5 615 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DCDC5Q6ZRR9 648 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 SLC36A1Q7Z2H8 476 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 FAM89BQ8N5H3 189 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DTX3Q8N9I9 347 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ZNRF1Q8ND25 227 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 OR56B1Q8NGI3 324 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 PHF21AQ96BD5 680 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 S100A16Q96FQ6 103 aaKnown RBP8.02□□□□□ -1.13
CUX1-216ENST00000558469 MED30Q96HR3 178 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 GAFA1Q96PS6 74 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ABCG5Q9H222 651 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 MMP27Q9H306 513 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ZNF665Q9H7R5 613 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 DUX4Q9UBX2 424 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 MIOXQ9UGB7 285 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 ZNF222Q9UK12 451 aa8.02□□□□□ -1.13
CUX1-216ENST00000558469 PRRC2AP48634 2157 aaKnown RBP8.01□□□□□ -1.13
CUX1-216ENST00000558469 ARHGAP32A7KAX9 2087 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 CSMD1Q96PZ7 3565 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 CEACAM18A8MTB9 384 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 VWC2LB2RUY7 222 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 SLC33A1O00400 549 aaPredicted RBP8.01□□□□□ -1.13
CUX1-216ENST00000558469 HSPB6O14558 160 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 APOA1P02647 267 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 AMY2BP19961 511 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 FUT3P21217 361 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 CDK2P24941 298 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 LMO1P25800 156 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 IL13RA1P78552 427 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 MOGAT2Q3SYC2 334 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 PAN3Q58A45 887 aaKnown RBP8.01□□□□□ -1.13
CUX1-216ENST00000558469 NKAPLQ5M9Q1 402 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 SIGIRRQ6IA17 410 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 RAB12Q6IQ22 244 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 PRSS57Q6UWY2 283 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 Q6ZTK2 550 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 LAX1Q8IWV1 398 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 BPIFB2Q8N4F0 458 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 ZNF561Q8N587 486 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 SPICQ8N5J4 248 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 FAM216BQ8N7L0 139 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 ASCC1Q8N9N2 400 aaKnown RBP8.01□□□□□ -1.13
CUX1-216ENST00000558469 SUMF2Q8NBJ7 301 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 CHST4Q8NCG5 386 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 OR10R2Q8NGX6 335 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 RAB40AQ8WXH6 277 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 SDSLQ96GA7 329 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 POM121Q96HA1 1249 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 CMTM3Q96MX0 182 aa8.01□□□□□ -1.13
CUX1-216ENST00000558469 NEDD4LQ96PU5 975 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms