RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 WDFY2Q96P53 400 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 SIRPDQ9H106 197 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 SLITRK2Q9H156 845 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 IL36GQ9NZH8 169 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 SF3B6Q9Y3B4 125 aaKnown RBP11.21□□□□□ -0.61
SHMT2-228ENST00000557302 KPTNQ9Y664 436 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 TRAV40A0A0B4J280 105 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 TMEM82A0PJX8 343 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 SIRPB1O00241 398 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF780AO75290 641 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-228ENST00000557302 ARL6IP5O75915 188 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 HTR3BO95264 441 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 OR2H2O95918 312 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 MMP9P14780 707 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF44P15621 663 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 SRMP19623 302 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 GP2P55259 537 aaKnown RBP11.2□□□□□ -0.62
SHMT2-228ENST00000557302 GRK1Q15835 563 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 SSX1Q16384 188 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 KLF17Q5JT82 389 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-228ENST00000557302 TMEM91Q6ZNR0 172 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 C17orf107Q6ZR85 190 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 GDPD3Q7L5L3 318 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 OR8H2Q8N162 312 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 Q8NFD4 153 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 TBC1D15Q8TC07 691 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 MUL1Q969V5 352 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 NR1H4Q96RI1 486 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-228ENST00000557302 UQCC2Q9BRT2 126 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 PCDHB16Q9NRJ7 776 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 C19orf12Q9NSK7 152 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 NDUFB11Q9NX14 153 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 NUP50Q9UKX7 468 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 MRPS28Q9Y2Q9 187 aaKnown RBP11.2□□□□□ -0.62
SHMT2-228ENST00000557302 ATRQ13535 2644 aa11.2□□□□□ -0.62
SHMT2-228ENST00000557302 IGHV3OR16-10A0A075B7F0 116 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 A0A1W2PPH5 198 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 CCRL2O00421 344 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 DEGS1O15121 323 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 CSTBP04080 98 aaKnown RBP11.19□□□□□ -0.62
SHMT2-228ENST00000557302 IGHV4-38-2P0DP08 117 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 FPR2P25090 351 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 EDDM3BP56851 147 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 FABP5Q01469 135 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 SCN1BQ07699 218 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 BLMHQ13867 455 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 EDDM3AQ14507 147 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 IL13RA2Q14627 380 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 SLC22A6Q4U2R8 563 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 GPR157Q5UAW9 335 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 GLT8D1Q68CQ7 371 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 AWAT2Q6E213 333 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 GLIPR1L1Q6UWM5 242 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 LRRTM1Q86UE6 522 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 BPIFB2Q8N4F0 458 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 CHST4Q8NCG5 386 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 OR4M1Q8NGD0 313 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 OR51T1Q8NGJ9 327 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 FOXRED1Q96CU9 486 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-228ENST00000557302 TBX15Q96SF7 602 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 CHST6Q9GZX3 395 aa11.19□□□□□ -0.62
SHMT2-228ENST00000557302 PPIL3Q9H2H8 161 aaKnown RBP11.19□□□□□ -0.62
SHMT2-228ENST00000557302 FBN1P35555 2871 aaKnown RBP11.18□□□□□ -0.62
SHMT2-228ENST00000557302 M0R1W7 72 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 MGST3O14880 152 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 PSPNO60542 156 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 TNFAIP8O95379 198 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 SERPINA2P20848 420 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 LMO1P25800 156 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 OR3A1P47881 315 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 GPR176Q14439 515 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 PDCD1Q15116 288 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 PIGYQ3MUY2 71 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 NHLRC3Q5JS37 347 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 Q6P435 159 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 C1orf122Q6ZSJ8 110 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 VMO1Q7Z5L0 202 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 LYPD6Q86Y78 171 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 OSR2Q8N2R0 312 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 OR4S1Q8NGB4 309 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 OR4D6Q8NGJ1 314 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF69Q9UC07 566 aa11.18□□□□□ -0.62
SHMT2-228ENST00000557302 A0A0G2JK05 382 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 SLC33A1O00400 549 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 GTF2F2P13984 249 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 CALRP27797 417 aaKnown RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 RBM11P57052 281 aaKnown RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 MEF2CQ06413 473 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 NEDD8Q15843 81 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 TMEM200BQ69YZ2 307 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 CD200R1LQ6Q8B3 271 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 Q8N7P7 452 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF418Q8TF45 676 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 C22orf15Q8WYQ4 148 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 LHX4Q969G2 390 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 SLC6A7Q99884 636 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 MS4A7Q9GZW8 240 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 PPA2Q9H2U2 334 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 METTL8Q9H825 291 aaKnown RBP11.17□□□□□ -0.62
SHMT2-228ENST00000557302 SIRT7Q9NRC8 400 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms