RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	MFGE8	Q08431	387 aa	Predicted RBP	10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	GRK1	Q15835	563 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLX4IP	Q5VYV7	408 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	OR52W1	Q6IF63	320 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	ETV3L	Q6ZN32	361 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	ZNF329	Q86UD4	541 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	RTN4RL2	Q86UN3	420 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	EGFL6	Q8IUX8	553 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	TPRX1	Q8N7U7	411 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	OR14K1	Q8NGZ2	314 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	TRMT10A	Q8TBZ6	339 aa	Known RBP	10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	NRG4	Q8WWG1	115 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	TFAP2C	Q92754	450 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	ADI1	Q9BV57	179 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	SEBOX	Q9HB31	216 aa	Predicted RBP	10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	MTCH1	Q9NZJ7	389 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	IKZF2	Q9UKS7	526 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	RAB26	Q9ULW5	256 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	HHLA2	Q9UM44	414 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689	GMPPB	Q9Y5P6	360 aa		10.06	□□□□□ -0.8
SHMT2-223	ENST00000556689		A0A1B0GTI1	187 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	SNTN	A6NMZ2	147 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	PRR32	B1ATL7	298 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	LOC110117498-PIK3R3	F6TDL0	507 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	RAMP3	O60896	148 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	MMP23A	O75900	390 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	INMT	O95050	263 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	ZFPL1	O95159	310 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	MRPL3	P09001	348 aa	Known RBP	10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	GABRR1	P24046	479 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	MYCNOS	P40205	109 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	RPL23A	P62750	156 aa	Known RBP	10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	ZIK1	Q3SY52	487 aa	Predicted RBP	10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	KLHL22	Q53GT1	634 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	TRAPPC6B	Q86SZ2	158 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	ELMOD2	Q8IZ81	293 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	C8orf59	Q8N0T1	100 aa	Predicted RBP	10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	OR52N4	Q8NGI2	321 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLAMF9	Q96A28	289 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	CHST6	Q9GZX3	395 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	ZFP57	Q9NU63	452 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	GLS2	Q9UI32	602 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	OR52A1	Q9UKL2	312 aa		10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	UBE2J1	Q9Y385	318 aa	Predicted RBP	10.05	□□□□□ -0.8
SHMT2-223	ENST00000556689	DHRS7C	A6NNS2	312 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	MGST3	O14880	152 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	SRSF10	O75494	262 aa	Known RBP	10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	HAND1	O96004	215 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	IGHA1	P01876	353 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	FAM106CP	P0CH98	169 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	ERP29	P30040	261 aa	Known RBP	10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLC6A1	P30531	599 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	CEACAM3	P40198	252 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	FUT6	P51993	359 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	SNAPC1	Q16533	368 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	BCL2L15	Q5TBC7	163 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689		Q6ZSR3	168 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	OR2W3	Q7Z3T1	314 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	ENTHD1	Q8IYW4	607 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	CREB3L1	Q96BA8	519 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLC29A1	Q99808	456 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	TTTY10	Q9BZA0	68 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	MOB1A	Q9H8S9	216 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLC25A19	Q9HC21	320 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	COPS3	Q9UNS2	423 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	PCDHGB5	Q9Y5G0	923 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689		R4GMQ9	66 aa		10.04	□□□□□ -0.8
SHMT2-223	ENST00000556689	LOC100130705	A0A1B0GUX0	176 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	NUDT19	A8MXV4	375 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	TOR1A	O14656	332 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	PSPN	O60542	156 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	MITF	O75030	526 aa	Predicted RBP	10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	IGLV1-47	P01700	117 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	CDK2	P24941	298 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	DUSP1	P28562	367 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	MNDA	P41218	407 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	PRRX1	P54821	245 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	MED21	Q13503	144 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	PTGES3	Q15185	160 aa	Known RBP	10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	UBE2V2	Q15819	145 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	PRAMEF5	Q5TYX0	476 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	TMEM236	Q5W0B7	351 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	CCDC144NL	Q6NUI1	221 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	BAIAP2L2	Q6UXY1	529 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	HEPN1	Q6WQI6	88 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	C8orf86	Q6ZUL3	223 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	SLC25A26	Q70HW3	274 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689		Q8IYB0	196 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	CHPT1	Q8WUD6	406 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	CORO2A	Q92828	525 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	EMG1	Q92979	244 aa	Known RBP	10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	HRASLS5	Q96KN8	279 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	MBOAT4	Q96T53	435 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	P2RX4	Q99571	388 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	GAL3ST2	Q9H3Q3	398 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	TVP23B	Q9NYZ1	205 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	LSM4	Q9Y4Z0	139 aa	Known RBP	10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	SNX5	Q9Y5X3	404 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	HSPE1-MOB4	S4R3N1	261 aa		10.03	□□□□□ -0.8
SHMT2-223	ENST00000556689	IGKV1-27	A0A075B6S5	117 aa		10.02	□□□□□ -0.81

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