RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	SAV1	Q9H4B6	383 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	DEPP	Q9NTK1	212 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	PQLC2L	A1A4F0	135 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	PATE3	B3GLJ2	98 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	DIRAS3	O95661	229 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR8U9	P0C7N5	309 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	PRSS12	P56730	875 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	GNMT	Q14749	295 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	AVPI1	Q5T686	147 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	DMBX1	Q8NFW5	382 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR8U1	Q8NH10	309 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	SPIN2A	Q99865	258 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	SPIN2B	Q9BPZ2	258 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	BIN3	Q9NQY0	253 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	SMCO4	Q9NRQ5	59 aa		11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	NOSIP	Q9Y314	301 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-222	ENST00000555774	C3orf85	A0A1B0GTC6	90 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	DUXB	A0A1W2PPF3	345 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	FAM221A	A4D161	298 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	MPPED1	O15442	326 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	MRPL33	O75394	65 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR7C1	O76099	320 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	FOLR2	P14207	255 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ACP1	P24666	158 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	SNCA	P37840	140 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	RPS18	P62269	152 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	FOXO1	Q12778	655 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TSPO2	Q5TGU0	170 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLC23A3	Q6PIS1	610 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	BRICD5	Q6PL45	260 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLC25A26	Q70HW3	274 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	DPPA2	Q7Z7J5	298 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	CALHM1	Q8IU99	346 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ABHD3	Q8WU67	409 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	CT55	Q8WUE5	264 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	RNF122	Q9H9V4	155 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	WFDC1	Q9HC57	220 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	CACFD1	Q9UGQ2	172 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	RCL1	Q9Y2P8	373 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TRIO	O75962	3097 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	CCDC85C	A6NKD9	419 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TRDC	B7Z8K6	153 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF587B	E7ETH6	402 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	LAMTOR5	O43504	91 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	DAZAP2	Q15038	168 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774		Q6ZPA2	131 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	C15orf54	Q8N8G6	183 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	CPEB3	Q8NE35	698 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR52M1	Q8NGK5	317 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	EXTL1	Q92935	676 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF845	Q96IR2	970 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TMEM56	Q96MV1	263 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	REPIN1	Q9BWE0	567 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TMEM222	Q9H0R3	208 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZDHHC8	Q9ULC8	765 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	TMEM56-RWDD3	S4R434	201 aa		11.63	□□□□□ -0.55
SHMT2-222	ENST00000555774	PI4KA	P42356	2102 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	USP34	Q70CQ2	3546 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	MED12	Q93074	2177 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	AGPAT2	O15120	278 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	CAMLG	P49069	296 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	FGF12	P61328	243 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	MPV17L	Q2QL34	196 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	MIDN	Q504T8	468 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	SLC35G3	Q8N808	338 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	LFNG	Q8NES3	379 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	OR11L1	Q8NGX0	322 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	HPSE2	Q8WWQ2	592 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	FAM173A	Q9BQD7	235 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	C11orf1	Q9H5F2	150 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	OPA3	Q9H6K4	179 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	P4HTM	Q9NXG6	502 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	B4GALT7	Q9UBV7	327 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	LOXL2	Q9Y4K0	774 aa		11.62	□□□□□ -0.55
SHMT2-222	ENST00000555774	PINLYP	A6NC86	204 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	C19orf67	A6NJJ6	358 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774		C9JQL5	133 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	ZNF205	O95201	554 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	CTXN2	P0C2S0	81 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	KCNJ3	P48549	501 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	NAXE	Q8NCW5	288 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	BSCL2	Q96G97	398 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	TP53RK	Q96S44	253 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774		Q9N2K0	584 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	C19orf12	Q9NSK7	152 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	SDK1	Q7Z5N4	2213 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	KIR2DS1	A0A191URI9	304 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774		A0A1B0GW64	132 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	NAPSA	O96009	420 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	TK1	P04183	234 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	NFYB	P25208	207 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	LMO1	P25800	156 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	KIR2DS4	P43632	304 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	ARF1	P84077	181 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	PRDX4	Q13162	271 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	KIR2DS1	Q14954	304 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	GUK1	Q16774	197 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	CEACAM21	Q3KPI0	293 aa		11.61	□□□□□ -0.55
SHMT2-222	ENST00000555774	LINC00596	Q86U02	117 aa		11.61	□□□□□ -0.55

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