RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ALDOBP05062 364 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 CD2P06729 351 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 IGHV1-8P0DP01 117 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 P2RX3P56373 397 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 EDDM3BP56851 147 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 MED21Q13503 144 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 GRK1Q15835 563 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 ZNF626Q68DY1 528 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 ASPHD2Q6ICH7 369 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 LIAT1Q6ZQX7 453 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 OR52N4Q8NGI2 321 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 OR13D1Q8NGV5 346 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 TSEN15Q8WW01 171 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 CYGBQ8WWM9 190 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 FOXRED1Q96CU9 486 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 EXOSC4Q9NPD3 245 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 PLCXD1Q9NUJ7 323 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 BABAM2Q9NXR7 383 aa13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 UBE2J1Q9Y385 318 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-209ENST00000554872 A0A1W2PRD5 423 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 A0A1W2PRF3 423 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 A0A1W2PRM7 423 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 FUOMA2VDF0 154 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 CLPXO76031 633 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 OR2H2O95918 312 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 RAB3AP20336 220 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 OMGP23515 440 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 GABRR1P24046 479 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 CAPGP40121 348 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 MTNR1BP49286 362 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 GTF2A1P52655 376 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 PROK1P58294 105 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 PAX5Q02548 391 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 LRRC75BQ2VPJ9 315 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 XAF1Q6GPH4 301 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 DHRS7BQ6IAN0 325 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 ASCL4Q6XD76 172 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 OR4S1Q8NGB4 309 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 LINC01006Q8NI28 216 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 C17orf50Q8WW18 174 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 TAF15Q92804 592 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 CORO2AQ92828 525 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 RFT1Q96AA3 541 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 TMEM80Q96HE8 168 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 SPACA5Q96QH8 159 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 CITED1Q99966 193 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 CDCA4Q9BXL8 241 aa13.03□□□□□ -0.32
CCDC88C-209ENST00000554872 TRRAPQ9Y4A5 3859 aa13.02□□□□□ -0.32
CCDC88C-209ENST00000554872 EFCAB10A6NFE3 127 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 HCKP08631 526 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 OR2G6Q5TZ20 316 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 DMKNQ6E0U4 476 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 Q6P435 159 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 Q6ZSV7 163 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 RNF144BQ7Z419 303 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 C8orf59Q8N0T1 100 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 OR51T1Q8NGJ9 327 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 OR5D18Q8NGL1 313 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 TMEM106AQ96A25 262 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 MALSU1Q96EH3 234 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 NCOR1P1Q9H4R4 102 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 RANBP3Q9H6Z4 567 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 DCLRE1BQ9H816 532 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 RAB18Q9NP72 206 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 TAS2R3Q9NYW6 316 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 GSTK1Q9Y2Q3 226 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF281Q9Y2X9 895 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 RNF114Q9Y508 228 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 SESN1Q9Y6P5 492 aa13.02□□□□□ -0.33
CCDC88C-209ENST00000554872 TRBV5-5A0A0J9YX44 114 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 MAGEB3O15480 346 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 GPX5O75715 221 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 INMTO95050 263 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 TMEM225BP0DP42 221 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 DUSP1P28562 367 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 DYNLT3P51808 116 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 LGALS4P56470 323 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 TAS2R43P59537 309 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 EDDM3AQ14507 147 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 IL13RA2Q14627 380 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 MINOS1Q5TGZ0 78 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 LAIR2Q6ISS4 152 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 ZNF782Q6ZMW2 699 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 GGHQ92820 318 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 SSX3Q99909 188 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 CHST6Q9GZX3 395 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 VCXQ9H320 206 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 TMEM138Q9NPI0 162 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 CHCHD3Q9NX63 227 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 IL36GQ9NZH8 169 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 SIRT4Q9Y6E7 314 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 MINOS1-NBL1R4GNA1 71 aa13.01□□□□□ -0.33
CCDC88C-209ENST00000554872 A0A0G2JK05 382 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 H3BUX3 64 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 SLC33A1O00400 549 aaPredicted RBP13□□□□□ -0.33
CCDC88C-209ENST00000554872 GABRPO00591 440 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 LALBAP00709 142 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 CD1AP06126 327 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 GNAO1P09471 354 aa13□□□□□ -0.33
CCDC88C-209ENST00000554872 FSTP19883 344 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms