RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LMO1P25800 156 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 ERP29P30040 261 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 TGFBR2P37173 567 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 PTGFRP43088 359 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 KCNJ3P48549 501 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 CEBPDP49716 269 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 EDDM3BP56851 147 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 GRK1Q15835 563 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 NHLRC3Q5JS37 347 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 ASPHD2Q6ICH7 369 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 ASCL4Q6XD76 172 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 SATL1Q86VE3 508 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 FGFRL1Q8N441 504 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 Q8NFD4 153 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 OR51T1Q8NGJ9 327 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 FCGR1BQ92637 280 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 FOXRED1Q96CU9 486 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 OR5M11Q96RB7 305 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 UQCC2Q9BRT2 126 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 SLITRK2Q9H156 845 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 ELL3Q9HB65 397 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 C19orf12Q9NSK7 152 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 GSTK1Q9Y2Q3 226 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 CENPVL3A0A0U1RRI6 287 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 OR2H2O95918 312 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 ZNF44P15621 663 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 ERVFRD-1P60508 538 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 TPBGQ13641 420 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 TMEM86BQ8N661 226 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 LHX4Q969G2 390 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 MRPS24Q96EL2 167 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 PRDM13Q9H4Q3 707 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 HEXA-AS1Q9H8Q6 139 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 TCF7L1Q9HCS4 588 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 GHRLQ9UBU3 117 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 LINC00312Q9Y6C7 94 aa11.82□□□□□ -0.52
CCDC88C-207ENST00000554051 TMEM82A0PJX8 343 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 ARL6IP5O75915 188 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 UBBP0CG47 229 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 HSMCR30P0CW71 290 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 CPEP16870 476 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 OR3A4PP47883 348 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 UBE2E1P51965 193 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 P2RX3P56373 397 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 MPV17LQ2QL34 196 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 ACSM3Q53FZ2 586 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 CRIP3Q6Q6R5 217 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 BRD3OSQ6XYD6 125 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 C17orf107Q6ZR85 190 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 JAGN1Q8N5M9 183 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SIGLECL1Q8N7X8 197 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SPATA3Q8NHX4 192 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM216AQ8WUB2 273 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 ZDHHC16Q969W1 377 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SLC25A28Q96A46 364 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 ZNF714Q96N38 554 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 MGLLQ99685 303 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 TMED9Q9BVK6 235 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 GAL3ST2Q9H3Q3 398 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 IFT22Q9H7X7 185 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SPACA1Q9HBV2 294 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SIRT7Q9NRC8 400 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 IL36RNQ9UBH0 155 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 UBE2J1Q9Y385 318 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 SF3B6Q9Y3B4 125 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 POMT1Q9Y6A1 747 aa11.81□□□□□ -0.52
CCDC88C-207ENST00000554051 TRAV8-7A0A075B6U6 113 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 IGHV3OR16-10A0A075B7F0 116 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 SIRPB1O00241 398 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 DEGS1O15121 323 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 PSPNO60542 156 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 SC5DO75845 299 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 VENTXO95231 258 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 FBP1P09467 338 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 GTF2F2P13984 249 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 GABRA5P31644 462 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 OR3A1P47881 315 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 SNU13P55769 128 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 PAX5Q02548 391 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 BAMBIQ13145 260 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 EDDM3AQ14507 147 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 KRTAP24-1Q3LI83 254 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 MIDNQ504T8 468 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 HSD17B12Q53GQ0 312 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 LIPKQ5VXJ0 399 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 GLT8D1Q68CQ7 371 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 TMEM200BQ69YZ2 307 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 LDLRAD3Q86YD5 345 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 OSR2Q8N2R0 312 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 Q8N7P7 452 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 C22orf15Q8WYQ4 148 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 C19orf24Q9BVV8 132 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 NCOR1P1Q9H4R4 102 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 ACOT13Q9NPJ3 140 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 MRPS28Q9Y2Q9 187 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM96BQ9Y3D0 163 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 ATRQ13535 2644 aa11.8□□□□□ -0.52
CCDC88C-207ENST00000554051 TRGV10A0A0A0MS01 117 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A10PA6NDY2 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 BTBD17A6NE02 478 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms