RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 DEFB108AA8MXU0 73 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CYTIPO60759 359 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 DUS4LO95620 317 aaKnown RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 GP1BAP07359 652 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PRKACBP22694 351 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CRYGSP22914 178 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PLA2G5P39877 138 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 SRSF3P84103 164 aaKnown RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PPA1Q15181 289 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 VWA1Q6PCB0 445 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM65Q6PI78 240 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ACOT7LQ6ZUV0 252 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 Q96M66 194 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CDH20Q9HBT6 801 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF71Q9NQZ8 489 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-215ENST00000552823 CCL28Q9NRJ3 127 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 PPP1R3CQ9UQK1 317 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 KCNIP3Q9Y2W7 256 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 COL12A1Q99715 3063 aa4.82□□□□□ -1.64
LIMA1-215ENST00000552823 TNCP24821 2201 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 KIAA1549Q9HCM3 1950 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 IGHV3-43A0A0B4J1X8 118 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 A0A0U1RQV5 110 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 hCG_38984A0A1B0GV85 526 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FIGNL2A6NMB9 653 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ANKRD30BLA7E2S9 258 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 H0YL77 283 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 MSTNO14793 375 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 WNT9BO14905 357 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 CST7O76096 145 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FCGR3AP08637 254 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 IGHV3-43DP0DP04 118 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FHITP49789 147 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FUT6P51993 359 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SCAND1P57086 179 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FOXF2Q12947 444 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 RBM39Q14498 530 aaKnown RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SMCO1Q147U7 214 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 KCNMB1Q16558 191 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 NHLRC3Q5JS37 347 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM268Q5VZI3 342 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ZDHHC23Q8IYP9 409 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF808Q8N4W9 903 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ZFP62Q8NB50 900 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 DEFB108BQ8NET1 73 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 C20orf24Q9BUV8 137 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 RNF126Q9BV68 326 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SF3B5Q9BWJ5 86 aaKnown RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF286AQ9HBT8 521 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 MTCH1Q9NZJ7 389 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 EMC3Q9P0I2 261 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 PCDHB10Q9UN67 800 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 V9GYS6 101 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 EXPH5Q8NEV8 1989 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 ZZEF1O43149 2961 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 NME2P1O60361 137 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 WDR1O75083 606 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 RBMXL2O75526 392 aaKnown RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 MED6O75586 246 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 IFNA2P01563 188 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 MELTFP08582 738 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 UBBP0CG47 229 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FKBP2P26885 142 aaKnown RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 AGTR1P30556 359 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 LINC00205P59089 165 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 TAS2R46P59540 309 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 EDDM3AQ14507 147 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 PLEKHN1Q494U1 663 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SPINK9Q5DT21 86 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 PRAMEF6Q5VXH4 476 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 JMJD6Q6NYC1 403 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 OVCH2Q7RTZ1 564 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 RPRMLQ8N4K4 120 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SLC30A7Q8NEW0 376 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 OR52M1Q8NGK5 317 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 OR1J1Q8NGS3 322 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 SYT3Q9BQG1 590 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 FGF23Q9GZV9 251 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 DNAJB11Q9UBS4 358 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 TNFSF18Q9UNG2 199 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 KLF13Q9Y2Y9 288 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 PLXNB1O43157 2135 aa4.81□□□□□ -1.64
LIMA1-215ENST00000552823 YLPM1P49750 1951 aaKnown RBP4.81□□□□□ -1.64
LIMA1-215ENST00000552823 LINC00862A6NCI5 91 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FAM24AA6NFZ4 105 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PRSS47A8MTI9 375 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 PROB1E7EW31 1015 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 MMP7P09237 267 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 OR8U9P0C7N5 309 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FUT3P21217 361 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FPR2P25090 351 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 MPGP29372 298 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 WNT5AP41221 380 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 POLR2GP62487 172 aaKnown RBP eCLIP4.8□□□□□ -1.64
LIMA1-215ENST00000552823 NHLH2Q02577 135 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 FGL1Q08830 312 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 DNM1P46Q6ZS02 220 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 ZDHHC22Q8N966 263 aa4.8□□□□□ -1.64
LIMA1-215ENST00000552823 BPIFCQ8NFQ6 507 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms