RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PLCXD3Q63HM9 321 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 RTL6Q6ICC9 239 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 FBXW12Q6X9E4 464 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 LIAT1Q6ZQX7 453 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 SLC35G3Q8N808 338 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 DMBX1Q8NFW5 382 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 MAFAQ8NHW3 353 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-213ENST00000552720 LYPD6BQ8NI32 183 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CLDN23Q96B33 292 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 NTNG2Q96CW9 530 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 FOXB1Q99853 325 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF442Q9H7R0 627 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 BIN3Q9NQY0 253 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 IL36RNQ9UBH0 155 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 EDARQ9UNE0 448 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 NSG2Q9Y328 171 aa6.48□□□□□ -1.37
LIMA1-213ENST00000552720 CHD3Q12873 2000 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CCDC163A0A0D9SF12 145 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 A0A1W2PPE3 182 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 PINLYPA6NC86 204 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 H7C1Q1 480 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 HSPB6O14558 160 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CST2P09228 141 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 DTYMKP23919 212 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 OTX2P32243 289 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 PPP1CCP36873 323 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CAMLGP49069 296 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 RAC3P60763 192 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SNRPEP62304 92 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 EXT1Q16394 746 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 TMEM42Q69YG0 159 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 ASCL4Q6XD76 172 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 LHFPL2Q6ZUX7 228 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SLC25A26Q70HW3 274 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 ZNF611Q8N823 705 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CPEB3Q8NE35 698 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 OR10D3Q8NH80 312 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 M1APQ8TC57 530 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 GALNT14Q96FL9 552 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SPOCK3Q9BQ16 436 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 ABHD14AQ9BUJ0 271 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 OR2H1Q9GZK4 316 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 EIF5A2Q9GZV4 153 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 ARV1Q9H2C2 271 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 PLEKHA2Q9HB19 425 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SPACA1Q9HBV2 294 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 DEPPQ9NTK1 212 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 PILRBQ9UKJ0 227 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 STARD10Q9Y365 291 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 FBXO7Q9Y3I1 522 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SIT1Q9Y3P8 196 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 TIMM10BQ9Y5J6 103 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 GTF3C1Q12789 2109 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 NKX2-6A6NCS4 301 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 FAM24AA6NFZ4 105 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 LINC01387J3KSC0 135 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 EIF3GO75821 320 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 PRH1P02810 166 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 DANCRP0C864 163 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CCNOP22674 350 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 OMGP23515 440 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 FOXG1P55316 489 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 IL11RAQ14626 422 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 CLINT1Q14677 625 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 TMEM182Q6ZP80 229 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 OR2Y1Q8NGV0 311 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 SFT2D1Q8WV19 159 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 HIST1H2BAQ96A08 127 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 MOB3AQ96BX8 217 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 INTS12Q96CB8 462 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 USB1Q9BQ65 265 aaKnown RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 FGF23Q9GZV9 251 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 MAGT1Q9H0U3 335 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 BCO1Q9HAY6 547 aa6.47□□□□□ -1.37
LIMA1-213ENST00000552720 FAM212BQ9NTI7 297 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-213ENST00000552720 NCOR1O75376 2440 aa6.46□□□□□ -1.37
LIMA1-213ENST00000552720 BOD1L1Q8NFC6 3051 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 A0A096LPE4 126 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 A0A1W2PPH5 198 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 A0A1W2PPZ6 126 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 C7orf77A4D0Y5 90 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 LRRC3CA6NJW4 275 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 A6NLC8 198 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 C9J4A7 227 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 GPR137BO60478 399 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 PDCD6O75340 191 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 PPYP01298 95 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 ARG1P05089 322 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 TCN2P20062 427 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 DUSP1P28562 367 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 P2RY1P47900 373 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 RBM11P57052 281 aaKnown RBP6.46□□□□□ -1.38
LIMA1-213ENST00000552720 POLR2GP62487 172 aaKnown RBP eCLIP6.46□□□□□ -1.38
LIMA1-213ENST00000552720 PMS2CLQ68D20 193 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 RBMS3Q6XE24 437 aaKnown RBP6.46□□□□□ -1.38
LIMA1-213ENST00000552720 CPT1CQ8TCG5 803 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 NAT6Q93015 286 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 RARRES2Q99969 163 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 GINS3Q9BRX5 216 aa6.46□□□□□ -1.38
LIMA1-213ENST00000552720 SF3B5Q9BWJ5 86 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms