RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 GABRA4P48169 554 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 PPP1CBP62140 327 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 PPP1R32Q7Z5V6 425 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 POC1BQ8TC44 478 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 C12orf57Q99622 126 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 SSX3Q99909 188 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 MSL2Q9HCI7 577 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 CD1AP06126 327 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 RAB4BP61018 213 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 RGS7BPQ6MZT1 257 aaPredicted RBP13.1□□□□□ -0.31
CUX1-214ENST00000550008 MRPL24Q96A35 216 aaKnown RBP13.1□□□□□ -0.31
CUX1-214ENST00000550008 CLDN23Q96B33 292 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 PRELID3BQ9Y3B1 194 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 FAM24AA6NFZ4 105 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 C21orf140B9A014 251 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 ADAM20O43506 726 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 RAB11AP62491 216 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 FAM181AQ8N9Y4 354 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 HPSE2Q8WWQ2 592 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 TCEAL7Q9BRU2 100 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 NARFLQ9H6Q4 476 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 SIGLEC5O15389 551 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 CXCL2P19875 107 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 COL19A1Q14993 1142 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 SSX2Q16385 188 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 C2CD4CQ8TF44 421 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 CHRNA10Q9GZZ6 450 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 GNG13Q9P2W3 67 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 ZNF391Q9UJN7 358 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 RGS13O14921 159 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 CRHP06850 196 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 F2RL1P55085 397 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 POLR2GP62487 172 aaKnown RBP eCLIP13.09□□□□□ -0.31
CUX1-214ENST00000550008 PDZK1IP1Q13113 114 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 SLC38A6Q8IZM9 456 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 OR6S1Q8NH40 331 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 PRR19A6NJB7 356 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 SOX15O60248 233 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 CEACAM6P40199 344 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 GPR12P47775 334 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 SLC25A42Q86VD7 318 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 NFAM1Q8NET5 270 aaPredicted RBP13.09□□□□□ -0.31
CUX1-214ENST00000550008 C14orf79Q96F83 325 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 NKX6-2Q9C056 277 aaPredicted RBP13.09□□□□□ -0.31
CUX1-214ENST00000550008 HMGB3O15347 200 aaKnown RBP13.09□□□□□ -0.31
CUX1-214ENST00000550008 SP9P0CG40 484 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 UBE2V2Q15819 145 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 ZNF260Q3ZCT1 412 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 SPINK9Q5DT21 86 aa13.09□□□□□ -0.31
CUX1-214ENST00000550008 RRP8O43159 456 aaKnown RBP13.08□□□□□ -0.32
CUX1-214ENST00000550008 TLE4Q04727 773 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 MRGPRDQ8TDS7 321 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 FBXO17Q96EF6 278 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 OR2J1Q9GZK6 312 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 PLEKHA2Q9HB19 425 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 RAB18Q9NP72 206 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 FBXL17Q9UF56 701 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 PRSS50Q9UI38 385 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 CD37P11049 281 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 OR3A1P47881 315 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 ZNF239Q16600 458 aaKnown RBP13.08□□□□□ -0.32
CUX1-214ENST00000550008 LYZL2Q7Z4W2 148 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 C1QL2Q7Z5L3 287 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 MDP1Q86V88 176 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 NAA60Q9H7X0 242 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 GPR27Q9NS67 375 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 FSTP19883 344 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 ZNF485Q8NCK3 441 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 OR10Z1Q8NGY1 313 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 GALMQ96C23 342 aa13.08□□□□□ -0.32
CUX1-214ENST00000550008 NAT2P11245 290 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 SELEP16581 610 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 H2BFSP57053 126 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 FNDC7Q5VTL7 733 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 SIGLEC12Q96PQ1 595 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 OPA3Q9H6K4 179 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 IFT22Q9H7X7 185 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 ERVH48-1M5A8F1 160 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 UMODP07911 640 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 CLEC12BQ2HXU8 276 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 RPUSD3Q6P087 351 aaKnown RBP13.07□□□□□ -0.32
CUX1-214ENST00000550008 MS4A7Q9GZW8 240 aaPredicted RBP13.07□□□□□ -0.32
CUX1-214ENST00000550008 NGBQ9NPG2 151 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 PCNX2A6NKB5 2137 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 LEUTXA8MZ59 168 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 TAAR5O14804 337 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 RPL19P84098 196 aaKnown RBP13.07□□□□□ -0.32
CUX1-214ENST00000550008 MPPED2Q15777 294 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 IGSF11Q5DX21 431 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 GFRALQ6UXV0 394 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 TPRX1Q8N7U7 411 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 RXFP4Q8TDU9 374 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 RAB9BQ9NP90 201 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 CCL28Q9NRJ3 127 aa13.07□□□□□ -0.32
CUX1-214ENST00000550008 ZMAT5Q9UDW3 170 aaKnown RBP13.07□□□□□ -0.32
CUX1-214ENST00000550008 SHOXO15266 292 aa13.06□□□□□ -0.32
CUX1-214ENST00000550008 HEXAP06865 529 aa13.06□□□□□ -0.32
CUX1-214ENST00000550008 TEX30Q5JUR7 227 aa13.06□□□□□ -0.32
CUX1-214ENST00000550008 SLC2A9Q9NRM0 540 aa13.06□□□□□ -0.32
CUX1-214ENST00000550008 C3orf85A0A1B0GTC6 90 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms