RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PSPNO60542 156 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 OSMP13725 252 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 SLC2A5P22732 501 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 ZNF146Q15072 292 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 ZNF322Q6U7Q0 402 aaPredicted RBP13.36□□□□□ -0.27
VPS29-204ENST00000548259 C18orf65Q6ZTR6 163 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 FAM58AQ8N1B3 248 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 CORO2AQ92828 525 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 RAX2Q96IS3 184 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 NOL4LQ96MY1 436 aaPredicted RBP13.36□□□□□ -0.27
VPS29-204ENST00000548259 TTTY10Q9BZA0 68 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 ZNF256Q9Y2P7 627 aaPredicted RBP13.36□□□□□ -0.27
VPS29-204ENST00000548259 TRBV2A0A0J9YWF9 115 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 A0A1B0GTI1 187 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 FAM172BPA6NC97 362 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 GNGT2O14610 69 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 SYT7O43581 403 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 TMEM11P17152 192 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 PRKACAP17612 351 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 ATP6V1B2P21281 511 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 DUSP1P28562 367 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 OR3A1P47881 315 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 ATP1B3P54709 279 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 CDK5Q00535 292 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 CXorf66Q5JRM2 361 aaPredicted RBP13.35□□□□□ -0.27
VPS29-204ENST00000548259 Q6ZSR3 168 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 DHFR2Q86XF0 187 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 RCHY1Q96PM5 261 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 DUX3Q96PT4 197 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 ELAC2Q9BQ52 826 aaKnown RBP13.35□□□□□ -0.27
VPS29-204ENST00000548259 ZNF286AQ9HBT8 521 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 EXOSC4Q9NPD3 245 aaKnown RBP13.35□□□□□ -0.27
VPS29-204ENST00000548259 TENM2Q9NT68 2774 aa13.35□□□□□ -0.27
VPS29-204ENST00000548259 LCE6AA0A183 80 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 ZNF670-ZNF695F2Z2N8 137 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 LY6LH3BQJ8 138 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 AP4M1O00189 453 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 SASH3O75995 380 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 LY86O95711 162 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 CST1P01037 141 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 SNRNP70P08621 437 aaKnown RBP13.34□□□□□ -0.27
VPS29-204ENST00000548259 RBP2P50120 134 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 CXCR4P61073 352 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 UBE2V2Q15819 145 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 PNLIPRP3Q17RR3 467 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 HSP90B2PQ58FF3 399 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 STPG2Q8N412 459 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 C5orf56Q8N8D9 126 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 OR9G1Q8NH87 305 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 APOL4Q9BPW4 351 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 PRRG3Q9BZD7 231 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 H2AFY2Q9P0M6 372 aaPredicted RBP13.34□□□□□ -0.27
VPS29-204ENST00000548259 TAGLN3Q9UI15 199 aa13.34□□□□□ -0.27
VPS29-204ENST00000548259 A0A087X0M5 115 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 A0A1B0GX30 115 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 TCRBV5S2A0A599 114 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A18PA6NE21 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A16PA6NEW6 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A20PA6NIJ5 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 ZNF729A6NN14 1252 aaPredicted RBP13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A9PA6NNJ1 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A12PA8MX19 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A5PA8MXJ8 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 SIRPB1O00241 398 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 ENTPD6O75354 484 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 SRSF10O75494 262 aaKnown RBP13.33□□□□□ -0.28
VPS29-204ENST00000548259 IGHG2P01859 326 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A15PP0C7V4 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A13PP0C7W8 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A14PP0C7W9 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 FAM90A24PP0C7X0 464 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 RAP2AP10114 183 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 CCL1P22362 96 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 RAB7AP51149 207 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 INSL3P51460 131 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 BNIP1Q12981 228 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 MADCAM1Q13477 382 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 KIR2DS1Q14954 304 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 BAIAP2L2Q6UXY1 529 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 LCNL1Q6ZST4 164 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 DRAM1Q8N682 238 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 DNAAF1Q8NEP3 725 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 OR56B4Q8NH76 319 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 PP6455Q8WZ26 134 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 C10orf35Q96D05 121 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 CHST5Q9GZS9 411 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 DCLRE1BQ9H816 532 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 ZMAT4Q9H898 229 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 RBFOX1Q9NWB1 397 aaKnown RBP13.33□□□□□ -0.28
VPS29-204ENST00000548259 TVP23BQ9NYZ1 205 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 OR6C3Q9NZP0 311 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 LINC00527Q9UJ94 153 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 COPS3Q9UNS2 423 aa13.33□□□□□ -0.28
VPS29-204ENST00000548259 IGKV1-27A0A075B6S5 117 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 ODAMA1E959 279 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 PRR32B1ATL7 298 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 RRP9O43818 475 aaKnown RBP13.32□□□□□ -0.28
VPS29-204ENST00000548259 KRT8P05787 483 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 OCM2P0CE71 109 aa13.32□□□□□ -0.28
VPS29-204ENST00000548259 OCMP0CE72 109 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms