RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ZNF154Q13106 437 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF141Q15928 474 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 FAM58AQ8N1B3 248 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 SPINK4O60575 86 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 SCGB2A1O75556 95 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 TUSC2O75896 110 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 HLA-DOBP13765 273 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 FCARP24071 287 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 FOXO1Q12778 655 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 LANCL3Q6ZV70 420 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 SIGLECL1Q8N7X8 197 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 BORCS7Q96B45 105 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 SMIM8Q96KF7 97 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 RBM14Q96PK6 669 aaKnown RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ST3GAL6Q9Y274 331 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ZSWIM8A7E2V4 1837 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 FREM3P0C091 2139 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 EIF4E2O60573 245 aaKnown RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF708P17019 499 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 SUMO1P63165 101 aaKnown RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ELSPBP1Q96BH3 223 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 FAM60AQ9NP50 221 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 DYNLRB1Q9NP97 96 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 PTPRDP23468 1912 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 H0Y8G0 127 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 GAPDHP04406 335 aaKnown RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 SPCS3P61009 180 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 IL13RA2Q14627 380 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 BSXQ3C1V8 233 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 PDLIM3Q53GG5 364 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 FBXL14Q8N1E6 418 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 FAM78BQ5VT40 261 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 MISP3Q96FF7 219 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 NOL4LQ96MY1 436 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 TBX15Q96SF7 602 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 TIMP4Q99727 224 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 AICDAQ9GZX7 198 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 WDR1O75083 606 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 MBPP02686 304 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 DPPA3Q6W0C5 159 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 C16orf47Q6ZP98 133 aaPredicted RBP12.55□□□□□ -0.4
LIMS1-215ENST00000544547 GJC3Q8NFK1 279 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 OR4C5Q8NGB2 326 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 DYRK2Q92630 601 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 SMOC1Q9H4F8 434 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 GNG12Q9UBI6 72 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 TRAPPC2LQ9UL33 140 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 VWA8A3KMH1 1905 aa12.55□□□□□ -0.4
LIMS1-215ENST00000544547 PLRG1O43660 514 aaKnown RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 DEDDO75618 318 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 MSR1P21757 451 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 INSM1Q01101 510 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PAX5Q02548 391 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 UBALD1Q8TB05 177 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 MRGPRX1Q96LB2 322 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 VSTM2LQ96N03 204 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PECRQ9BY49 303 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 DUSP13Q9UII6 198 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 TMED3Q9Y3Q3 217 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 MAP1LC3B2A6NCE7 125 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 AQP3Q92482 292 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 MAP1LC3BQ9GZQ8 125 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 M0R135 149 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 CELA2BP08218 269 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 HNRNPA3P51991 378 aaKnown RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 ISXQ2M1V0 245 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF784Q8NCA9 323 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 Q8WTZ3 238 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 NTNG2Q96CW9 530 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF799Q96GE5 643 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF586Q9NXT0 402 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PRSS50Q9UI38 385 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 SDK2Q58EX2 2172 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 UBE2L5PA0A1B0GUS4 154 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 NKX2-6A6NCS4 301 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 H0YIG0 161 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 IGHV3-9P01782 118 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 CTSDP07339 412 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 EDN3P14138 238 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PMCHP20382 165 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 ACOT6Q3I5F7 207 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-215ENST00000544547 OR2T10Q8NGZ9 312 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 C14orf144Q96I85 54 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 LPAR5Q9H1C0 372 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 SLC25A22Q9H936 323 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PSENENQ9NZ42 101 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 PPP1R3CQ9UQK1 317 aa12.54□□□□□ -0.4
LIMS1-215ENST00000544547 MASP2O00187 686 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 HS3ST1O14792 307 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF737O75373 536 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 DANCRP0C864 163 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 AGAP20933 346 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 GRB2P62993 217 aaKnown RBP12.53□□□□□ -0.4
LIMS1-215ENST00000544547 MZT1Q08AG7 82 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 ANXA10Q9UJ72 324 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CASP8AP2Q9UKL3 1982 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 CHST1O43916 411 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 IGHEP01854 428 aa12.53□□□□□ -0.4
LIMS1-215ENST00000544547 OR11L1Q8NGX0 322 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms