RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CA6P23280 308 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 NHLH2Q02577 135 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 DAZAP2Q15038 168 aaPredicted RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 TMEM164Q5U3C3 297 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 ABLIM2Q6H8Q1 611 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 HSD17B11Q8NBQ5 300 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 POC1AQ8NBT0 407 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 RBMXL1Q96E39 390 aaKnown RBP14.56□□□□□ -0.08
USP28-208ENST00000540438 SLC25A32Q9H2D1 315 aa14.56□□□□□ -0.08
USP28-208ENST00000540438 CYTIPO60759 359 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 MED6O75586 246 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 TBPP20226 339 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 P4HA3Q7Z4N8 544 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 TP53RKQ96S44 253 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 TSNAXQ99598 290 aaKnown RBP14.55□□□□□ -0.08
USP28-208ENST00000540438 TM2D1Q9BX74 207 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 SLC2A9Q9NRM0 540 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 M0R296 226 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 NFYBP25208 207 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 MALLQ13021 153 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 ALKBH6Q3KRA9 238 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 HPSE2Q8WWQ2 592 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 FBXL17Q9UF56 701 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 ARHGAP21Q5T5U3 1957 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 NKX2-8O15522 239 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 SYNGR4O95473 234 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 TPT1P13693 172 aaKnown RBP14.55□□□□□ -0.08
USP28-208ENST00000540438 RPL12P30050 165 aaKnown RBP14.55□□□□□ -0.08
USP28-208ENST00000540438 LPAR6P43657 344 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 CCL11P51671 97 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 CLINT1Q14677 625 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 C20orf204Q6ZNR8 217 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 INTS1Q8N201 2190 aaKnown RBP14.55□□□□□ -0.08
USP28-208ENST00000540438 FAM173AQ9BQD7 235 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 NMES1Q9C002 83 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 TLNRD1Q9H1K6 362 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 RAB18Q9NP72 206 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 MTCH1Q9NZJ7 389 aa14.55□□□□□ -0.08
USP28-208ENST00000540438 MUC6Q6W4X9 2439 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 PLCE1Q9P212 2302 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 F8W036 122 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 LYZL6O75951 148 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 APOC1P02654 83 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 PRKACAP17612 351 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 CALCRP30988 508 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 TMEM33P57088 247 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 BLOC1S1P78537 153 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 PRSS54Q6PEW0 395 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 OR4A4PQ8NGN8 299 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 EXTL1Q92935 676 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 APH1AQ96BI3 265 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 USF3Q68DE3 2245 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 ZNF816-ZNF321PA0A0X1KG74 233 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 SPAARA0A1B0GVQ0 90 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 ATP6V1G2-DDX39BF2Z307 99 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 K7EPK0 472 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 NME2P1O60361 137 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 FAHD2BQ6P2I3 314 aaPredicted RBP14.54□□□□□ -0.08
USP28-208ENST00000540438 FAM71E2Q8N5Q1 922 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 MARC2Q969Z3 335 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 SPSB1Q96BD6 273 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 INTS12Q96CB8 462 aaKnown RBP14.54□□□□□ -0.08
USP28-208ENST00000540438 FAHD2AQ96GK7 314 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 SH3BGRL3Q9H299 93 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 TAF9BQ9HBM6 251 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 NECAP2Q9NVZ3 263 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 LUZP4Q9P127 313 aa14.54□□□□□ -0.08
USP28-208ENST00000540438 KRBOX1C9JBD0 128 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 H3BP45 60 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 MBPP02686 304 aaPredicted RBP14.53□□□□□ -0.08
USP28-208ENST00000540438 HKR1P10072 659 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 HLA-GP17693 338 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 EPHA1P21709 976 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 CBX5P45973 191 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 CEBPDP49716 269 aaPredicted RBP14.53□□□□□ -0.08
USP28-208ENST00000540438 ZNF345Q14585 488 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 ACTBL2Q562R1 376 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 PEAR1Q5VY43 1037 aaPredicted RBP14.53□□□□□ -0.08
USP28-208ENST00000540438 BCO1Q9HAY6 547 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 IGKV1D-13A0A0B4J2D9 117 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 IGKV1-13P0DP09 117 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 MPZP25189 248 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 RBM11P57052 281 aaKnown RBP14.53□□□□□ -0.08
USP28-208ENST00000540438 C1orf123Q9NWV4 160 aa14.53□□□□□ -0.08
USP28-208ENST00000540438 ZNF133P52736 654 aaPredicted RBP14.52□□□□□ -0.08
USP28-208ENST00000540438 ARG2P78540 354 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 ZNF616Q08AN1 781 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 TMEM268Q5VZI3 342 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 FAM180AQ6UWF9 173 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 LHFPL2Q6ZUX7 228 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 HSD17B13Q7Z5P4 300 aaPredicted RBP14.52□□□□□ -0.08
USP28-208ENST00000540438 PUSL1Q8N0Z8 303 aaKnown RBP14.52□□□□□ -0.08
USP28-208ENST00000540438 TMEM217Q8N7C4 229 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 C20orf24Q9BUV8 137 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 ANAPC10Q9UM13 185 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 C9JQL5 133 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 IDH3GP51553 393 aaPredicted RBP14.52□□□□□ -0.08
USP28-208ENST00000540438 FUT6P51993 359 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 OR51H1Q8NH63 302 aa14.52□□□□□ -0.08
USP28-208ENST00000540438 PLPPR2Q96GM1 343 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms