RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 LY6LH3BQJ8 138 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 M0QZK8 103 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 M0R129 80 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 SULT1C4O75897 302 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 INMTO95050 263 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 BCL3P20749 454 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 LMO1P25800 156 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 RBP2P50120 134 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 GYS2P54840 703 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 ODF4Q2M2E3 257 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 HLA-DRB5Q30154 266 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 PRAMEF5Q5TYX0 476 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 C12orf73Q69YU5 71 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 ETV3LQ6ZN32 361 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 TRAPPC6BQ86SZ2 158 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 GLS2Q9UI32 602 aa10.79□□□□□ -0.68
SS18-204ENST00000539244 TRGV10A0A0A0MS01 117 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 IGKV1-9A0A0C4DH69 117 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 A0A1W2PQL4 384 aaPredicted RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 FUOMA2VDF0 154 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 METTL15A6NJ78 407 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 OOSP1A8MZH6 123 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 H3BSH0 61 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 BUB1B-PAK6H3BSN5 160 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 CYB5AP00167 134 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 CSN2P05814 226 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 OR2T7P0C7T2 308 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 VSIG8P0DPA2 414 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 CDK2P24941 298 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 DUSP1P28562 367 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 EPHA2P29317 976 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 HOXD3P31249 432 aaPredicted RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 CEACAM3P40198 252 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 ATP1B3P54709 279 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 ISL1P61371 349 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 CD69Q07108 199 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 DCTN2Q13561 401 aaKnown RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 FLOT2Q14254 428 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 TPTE2P1Q5T6R2 138 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 UTS2BQ765I0 119 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 SPATA24Q86W54 205 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 MRPL41Q8IXM3 137 aaKnown RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 OR51D1Q8NGF3 324 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 DPF1Q92782 380 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 UTP4Q969X6 686 aaKnown RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 ADI1Q9BV57 179 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 ZNF286AQ9HBT8 521 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 HMG20AQ9NP66 347 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 WARS2Q9UGM6 360 aaKnown RBP10.78□□□□□ -0.68
SS18-204ENST00000539244 PCDHGB5Q9Y5G0 923 aa10.78□□□□□ -0.68
SS18-204ENST00000539244 LOC107986453A0A1B0GWG9 222 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A18PA6NE21 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A16PA6NEW6 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A20PA6NIJ5 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A9PA6NNJ1 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A12PA8MX19 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A5PA8MXJ8 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 SH2D1BO14796 132 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 OR2H2O95918 312 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM107AO95990 144 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A15PP0C7V4 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A13PP0C7W8 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A14PP0C7W9 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 FAM90A24PP0C7X0 464 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 UBCP0CG48 685 aaKnown RBP10.77□□□□□ -0.69
SS18-204ENST00000539244 PRKACAP17612 351 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 SLC6A1P30531 599 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 GDNFP39905 211 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 THBS3P49746 956 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 PDZK1IP1Q13113 114 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 KHDC1LQ5JSQ8 128 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 CCDC144NLQ6NUI1 221 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 THNSL2Q86YJ6 484 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 PRSS35Q8N3Z0 413 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 SPSB1Q96BD6 273 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 TBX5Q99593 518 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 MCRIP2Q9BUT9 160 aaKnown RBP10.77□□□□□ -0.69
SS18-204ENST00000539244 COMMD4Q9H0A8 199 aa10.77□□□□□ -0.69
SS18-204ENST00000539244 EXOSC4Q9NPD3 245 aaKnown RBP10.77□□□□□ -0.69
SS18-204ENST00000539244 ODAMA1E959 279 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 PSMB11A5LHX3 300 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 SH2D7A6NKC9 451 aaPredicted RBP10.76□□□□□ -0.69
SS18-204ENST00000539244 SIRPB1O00241 398 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 MITFO75030 526 aaPredicted RBP10.76□□□□□ -0.69
SS18-204ENST00000539244 KDM4BO94953 1096 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 ATF1P18846 271 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 PRKACBP22694 351 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 HTR1FP30939 366 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 MNDAP41218 407 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 PTGFRP43088 359 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 GLIPR1P48060 266 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 POU3F4P49335 361 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 MTCP1P56278 107 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 RPL23AP62750 156 aaKnown RBP10.76□□□□□ -0.69
SS18-204ENST00000539244 KDM4DQ6B0I6 523 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 LHFPL2Q6ZUX7 228 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 BCAS4Q8TDM0 211 aa10.76□□□□□ -0.69
SS18-204ENST00000539244 RNF166Q96A37 237 aaPredicted RBP10.76□□□□□ -0.69
SS18-204ENST00000539244 ADAT3Q96EY9 351 aaPredicted RBP10.76□□□□□ -0.69
SS18-204ENST00000539244 IL4I1Q96RQ9 567 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms