RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MMP23AO75900 390 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 ALX3O95076 343 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 BCL3P20749 454 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 HTR1DP28221 377 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 KIR3DL2P43630 455 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 OR3A1P47881 315 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 RBP2P50120 134 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 ATP1B3P54709 279 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 P2RX3P56373 397 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 ZNF85Q03923 595 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 IL18R1Q13478 541 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 SPIN3Q5JUX0 258 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 MEDAGQ5VYS4 303 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 UTS2BQ765I0 119 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 FAM58AQ8N1B3 248 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 WFDC9Q8NEX5 89 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 TRUB1Q8WWH5 349 aaKnown RBP9.09□□□□□ -0.95
VPS28-214ENST00000531032 RNFT2Q96EX2 444 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 ADAT3Q96EY9 351 aaPredicted RBP9.09□□□□□ -0.95
VPS28-214ENST00000531032 MRPL48Q96GC5 212 aaKnown RBP9.09□□□□□ -0.95
VPS28-214ENST00000531032 UBE2J1Q9Y385 318 aaPredicted RBP9.09□□□□□ -0.95
VPS28-214ENST00000531032 GMPPBQ9Y5P6 360 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 DNAH3Q8TD57 4116 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 DAPL1A0PJW8 107 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 H3BUI4 141 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 BAG2O95816 211 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 CYB5AP00167 134 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 OCM2P0CE71 109 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 OCMP0CE72 109 aaPredicted RBP9.08□□□□□ -0.96
VPS28-214ENST00000531032 PRKACAP17612 351 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 PRKACBP22694 351 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 DUSP1P28562 367 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 POU3F4P49335 361 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 MTCP1P56278 107 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 BDH1Q02338 343 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 TP53I3Q53FA7 332 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 TCTEX1D4Q5JR98 221 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 FOXB2Q5VYV0 432 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 OR52W1Q6IF63 320 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 HEPN1Q6WQI6 88 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 TRAPPC6BQ86SZ2 158 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 RTN4RL2Q86UN3 420 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 RDH10Q8IZV5 341 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 ABHD12Q8N2K0 398 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 OR5AU1Q8NGC0 362 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 SPSB1Q96BD6 273 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 AKR1E2Q96JD6 320 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 HRASLS5Q96KN8 279 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 MYCBPQ99417 103 aaPredicted RBP9.08□□□□□ -0.96
VPS28-214ENST00000531032 GAL3ST2Q9H3Q3 398 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 LIN7BQ9HAP6 207 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 S100A14Q9HCY8 104 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 HMG20AQ9NP66 347 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 DPM3Q9P2X0 92 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 GLS2Q9UI32 602 aa9.08□□□□□ -0.96
VPS28-214ENST00000531032 TRGV10A0A0A0MS01 117 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 A0A1W2PRX2 142 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 OR2H2O95918 312 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 IGLV1-47P01700 117 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 ISG15P05161 165 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 IGLL1P15814 213 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 ZNF20P17024 532 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 ATF1P18846 271 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 CD33P20138 364 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 CD34P28906 385 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 PDZK1IP1Q13113 114 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 PRAMEF5Q5TYX0 476 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 TMEM244Q5VVB8 128 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 FDX2Q6P4F2 183 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 BAIAP2L2Q6UXY1 529 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 LHFPL2Q6ZUX7 228 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 PQLC1Q8N2U9 271 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 OR2G2Q8NGZ5 317 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 ZNF596Q8TC21 504 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 CORO2AQ92828 525 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 MBOAT4Q96T53 435 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 COMMD4Q9H0A8 199 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 EXOSC4Q9NPD3 245 aaKnown RBP9.07□□□□□ -0.96
VPS28-214ENST00000531032 TAS2R3Q9NYW6 316 aa9.07□□□□□ -0.96
VPS28-214ENST00000531032 IGKV1-12A0A0C4DH73 117 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 FUOMA2VDF0 154 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 SIRPB1O00241 398 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 SH2D1BO14796 132 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 MPZL2O60487 215 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 KDM4BO94953 1096 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 OR2F2O95006 317 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 IGKV1D-12P01611 117 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 MT-ND2P03891 347 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 CSN2P05814 226 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 HTR1AP08908 422 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 CALCBP10092 127 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 PF4V1P10720 104 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 CDK2P24941 298 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 CD24P25063 80 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 LMO1P25800 156 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 BRS3P32247 399 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 ARHGDIBP52566 201 aa9.06□□□□□ -0.96
VPS28-214ENST00000531032 SNU13P55769 128 aaKnown RBP9.06□□□□□ -0.96
VPS28-214ENST00000531032 SNRPGP62308 76 aaKnown RBP9.06□□□□□ -0.96
VPS28-214ENST00000531032 ZSCAN26Q16670 478 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms