RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RASL10AQ92737 203 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 UCN3Q969E3 161 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 NEIL2Q969S2 332 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 FGGYQ96C11 551 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 ZNF488Q96MN9 340 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 SORT1Q99523 831 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 SIGMAR1Q99720 223 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 RNF126Q9BV68 326 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 FAIM2Q9BWQ8 316 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 PECRQ9BY49 303 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 RPF2Q9H7B2 306 aaKnown RBP2.52□□□□□ -2.01
CD44-229ENST00000528672 SPANXA1Q9NS26 97 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 CALML5Q9NZT1 146 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 ZNF581Q9P0T4 197 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 METTL1Q9UBP6 276 aaKnown RBP2.52□□□□□ -2.01
CD44-229ENST00000528672 VPS29Q9UBQ0 182 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 RSL24D1Q9UHA3 163 aaKnown RBP2.52□□□□□ -2.01
CD44-229ENST00000528672 ZFP30Q9Y2G7 519 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 CAMSAP1Q5T5Y3 1602 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 MED14O60244 1454 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 SNAPC4Q5SXM2 1469 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 ARHGAP35Q9NRY4 1499 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 CEP164Q9UPV0 1460 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 SPEF2Q9C093 1822 aa2.52□□□□□ -2.01
CD44-229ENST00000528672 PTPRTO14522 1441 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TNS2Q63HR2 1409 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 PTPRJQ12913 1337 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 IGKV1D-8A0A087WSZ0 117 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 A0A087WUJ7 227 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 MEIKINA0A087WXM9 373 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 IGHV1OR21-1A0A087WYE8 117 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 GLYATL1P3A0A0U1RQE8 302 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CENPVL3A0A0U1RRI6 287 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 A0A1B0GU03 582 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 A0A1W2PPR1 153 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 C20orf202A1L168 122 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ISPDA4D126 451 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 NKX2-6A6NCS4 301 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 A8MWP6 167 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SRRM5B3KS81 715 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 KRBOX1C9JBD0 128 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 H7C417 338 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 FAAHO00519 579 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CCL21O00585 134 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TBL1XO60907 577 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ZNF780AO75290 641 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 FOXH1O75593 365 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CNMDO75829 334 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 GADD45GO95257 159 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 C6orf47O95873 294 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TBX6O95947 436 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 HPNP05981 417 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 LIMS3P0CW19 117 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 LIMS4P0CW20 117 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CYBAP13498 195 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 FOLR2P14207 255 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 MGMTP16455 207 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ZNF30P17039 623 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 IL1RNP18510 177 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 HIST1H1TP22492 207 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 TNFSF9P41273 254 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 AQP5P55064 265 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ZNF121P58317 390 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 PPP3R1P63098 170 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CXCL6P80162 114 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CDK5Q00535 292 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 BCL2L1Q07817 233 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 GUCA2BQ16661 112 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TTLL9Q3SXZ7 439 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 KLF17Q5JT82 389 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 NCMAPQ5T1S8 102 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TMEM78Q5T7P6 136 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ANKRD22Q5VYY1 191 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TRIM40Q6P9F5 258 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TEX261Q6UWH6 196 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CXCL17Q6UXB2 119 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ZNF620Q6ZNG0 422 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TMPPEQ6ZT21 453 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 FAM19A1Q7Z5A9 133 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 PPP1R27Q86WC6 154 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SNX29P2Q8IUI4 249 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 BAP18Q8IXM2 172 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CPNE9Q8IYJ1 553 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ACBD7Q8N6N7 88 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR1S2Q8NGQ3 325 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR13G1Q8NGZ3 307 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR2G2Q8NGZ5 317 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR4X1Q8NH49 305 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR4C6Q8NH72 309 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TERB2Q8NHR7 220 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 ORAOV1Q8WV07 137 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 RPUSD4Q96CM3 377 aaKnown RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 MRAP2Q96G30 205 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SMARCD1Q96GM5 515 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 FCRL1Q96LA6 429 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR2M2Q96R28 347 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OR7D2Q96RA2 312 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 HIST1H4GQ99525 98 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SOSTQ9BQB4 213 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 C20orf144Q9BQM9 153 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms