RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 COMMD2Q86X83 199 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF573Q86YE8 665 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 ASCC1Q8N9N2 400 aaKnown RBP11.36□□□□□ -0.59
CPSF1-201ENST00000526271 OR13D1Q8NGV5 346 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 CNIH3Q8TBE1 160 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 TRMT10AQ8TBZ6 339 aaKnown RBP11.36□□□□□ -0.59
CPSF1-201ENST00000526271 PKIBQ9C010 78 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 MRPS18AQ9NVS2 196 aaKnown RBP11.36□□□□□ -0.59
CPSF1-201ENST00000526271 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.36□□□□□ -0.59
CPSF1-201ENST00000526271 TENM2Q9NT68 2774 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 A0A1W2PPH5 198 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 INMTO95050 263 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 NPBWR2P48146 333 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 EDDM3BP56851 147 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 RPS7P62081 194 aaKnown RBP11.35□□□□□ -0.59
CPSF1-201ENST00000526271 IL24Q13007 206 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 DYNC1I2Q13409 638 aaKnown RBP11.35□□□□□ -0.59
CPSF1-201ENST00000526271 OR8H2Q8N162 312 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 SLAMF9Q96A28 289 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF714Q96N38 554 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 CHST6Q9GZX3 395 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 ADGRL4Q9HBW9 690 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 ABCB10Q9NRK6 738 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 PLCXD1Q9NUJ7 323 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 HHLA2Q9UM44 414 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 EXOGQ9Y2C4 368 aaKnown RBP11.35□□□□□ -0.59
CPSF1-201ENST00000526271 SESN1Q9Y6P5 492 aa11.35□□□□□ -0.59
CPSF1-201ENST00000526271 J3QRE1 110 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 F2RL2O00254 374 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF254O75437 659 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 IGLV1-47P01700 117 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 LPLP06858 475 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 DBTP11182 482 aaKnown RBP11.34□□□□□ -0.59
CPSF1-201ENST00000526271 DUSP1P28562 367 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 RIDAP52758 137 aaKnown RBP11.34□□□□□ -0.59
CPSF1-201ENST00000526271 CXCR4P61073 352 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF91Q05481 1191 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 EDDM3AQ14507 147 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 SMN1Q16637 294 aaKnown RBP11.34□□□□□ -0.59
CPSF1-201ENST00000526271 C6orf141Q5SZD1 244 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 MINOS1Q5TGZ0 78 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 ITFG2Q969R8 447 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 RNFT2Q96EX2 444 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 MROQ9BYG7 248 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 TMEM133Q9H2Q1 129 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 Q9H521 79 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 PITPNC1Q9UKF7 332 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 OR52A1Q9UKL2 312 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 POLDIP2Q9Y2S7 368 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 RPL36Q9Y3U8 105 aaKnown RBP11.34□□□□□ -0.59
CPSF1-201ENST00000526271 R4GMQ9 66 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 MINOS1-NBL1R4GNA1 71 aa11.34□□□□□ -0.59
CPSF1-201ENST00000526271 hCG_1809904A0A1W2PP81 198 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 A0A1W2PPE2 198 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 A0A1W2PR64 198 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 A0A1W2PRV1 198 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 TCRBV4S1A1TA0A5B7 111 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 FAM172BPA6NC97 362 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 LOC110117498-PIK3R3F6TDL0 507 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 CHRM2P08172 466 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 CALCBP10092 127 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 OR3A1P47881 315 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 ABCA11PQ4W5N1 156 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 PRAMEF5Q5TYX0 476 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 KCTD18Q6PI47 426 aaPredicted RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 ZNF322Q6U7Q0 402 aaPredicted RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 MRPL41Q8IXM3 137 aaKnown RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 ZNF676Q8N7Q3 588 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 LGALS12Q96DT0 336 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 RCC1LQ96I51 464 aaKnown RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 SNX22Q96L94 193 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 CNBD2Q96M20 576 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 CLEC7AQ9BXN2 247 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 ZNF286AQ9HBT8 521 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 AMBNQ9NP70 447 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 RBFOX1Q9NWB1 397 aaKnown RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 IKZF2Q9UKS7 526 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 PCDHGB5Q9Y5G0 923 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 TSSC4Q9Y5U2 329 aaPredicted RBP11.33□□□□□ -0.6
CPSF1-201ENST00000526271 DNAH1Q9P2D7 4330 aa11.33□□□□□ -0.6
CPSF1-201ENST00000526271 IGKV1-9A0A0C4DH69 117 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 FAM230AA0A1W2PPH8 454 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 LY6LH3BQJ8 138 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 PF4V1P10720 104 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 OR12D2P58182 307 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 SLC35A2P78381 396 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 MEF2CQ06413 473 aaPredicted RBP11.32□□□□□ -0.6
CPSF1-201ENST00000526271 RAB40BQ12829 278 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 ZNF829Q3KNS6 432 aaPredicted RBP11.32□□□□□ -0.6
CPSF1-201ENST00000526271 KLHL22Q53GT1 634 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 DEFB121Q5J5C9 76 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 DTX3Q8N9I9 347 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 GGHQ92820 318 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 CEP19Q96LK0 163 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 CNN2Q99439 309 aaKnown RBP11.32□□□□□ -0.6
CPSF1-201ENST00000526271 MNTQ99583 582 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 B9D2Q9BPU9 175 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 SLC25A33Q9BSK2 321 aa11.32□□□□□ -0.6
CPSF1-201ENST00000526271 FGF20Q9NP95 211 aaPredicted RBP11.32□□□□□ -0.6
CPSF1-201ENST00000526271 LINC00312Q9Y6C7 94 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms