RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NDRG3Q9UGV2 375 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 FRYLO94915 3013 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 WDFY3Q8IZQ1 3526 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 PQLC2LA1A4F0 135 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 FBXO24O75426 580 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 NEURL1O76050 574 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 COX5BP10606 129 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 SRSF7Q16629 238 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS28-205ENST00000526204 ABHD17BQ5VST6 288 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 FAM185AQ8N0U4 392 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 OR5L1Q8NGL2 311 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 SMOC1Q9H4F8 434 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 TMEM231Q9H6L2 316 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 TMED3Q9Y3Q3 217 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 NCKAP5O14513 1909 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 BORCS7-ASMTA0A0B4J1R7 106 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 SYNGR4O95473 234 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 MUC1P15941 1255 aaPredicted RBP18.31■□□□□ 0.52
VPS28-205ENST00000526204 SRPXP78539 464 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 IL13RA2Q14627 380 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 DHRS7BQ6IAN0 325 aaPredicted RBP18.31■□□□□ 0.52
VPS28-205ENST00000526204 PAPOLGQ9BWT3 736 aaKnown RBP18.31■□□□□ 0.52
VPS28-205ENST00000526204 ARV1Q9H2C2 271 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 FAM212BQ9NTI7 297 aaPredicted RBP18.31■□□□□ 0.52
VPS28-205ENST00000526204 ABI3Q9P2A4 366 aa18.31■□□□□ 0.52
VPS28-205ENST00000526204 RNASEK-C17orf49H0YIS7 233 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 GPR137BO60478 399 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 AADACP22760 399 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 FLI1Q01543 452 aaPredicted RBP18.3■□□□□ 0.52
VPS28-205ENST00000526204 SRYQ05066 204 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 PDCD1Q15116 288 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 SWI5Q1ZZU3 235 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 OR56B2PQ8NGI1 322 aa18.3■□□□□ 0.52
VPS28-205ENST00000526204 H7C2Y5 167 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 PHF1O43189 567 aaPredicted RBP18.29■□□□□ 0.52
VPS28-205ENST00000526204 PPYP01298 95 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 P2RY1P47900 373 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 NPBWR2P48146 333 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 CLDN18P56856 261 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 ST8SIA3O43173 380 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 PRDX4Q13162 271 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 DAZAP2Q15038 168 aaPredicted RBP18.29■□□□□ 0.52
VPS28-205ENST00000526204 FBXW12Q6X9E4 464 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 LYPD6BQ8NI32 183 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 EXTL1Q92935 676 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 APOBEC3DQ96AK3 386 aaPredicted RBP18.29■□□□□ 0.52
VPS28-205ENST00000526204 GPR87Q9BY21 358 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 SMIM3Q9BZL3 60 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 FAM96BQ9Y3D0 163 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 WDFY4Q6ZS81 3184 aa18.29■□□□□ 0.52
VPS28-205ENST00000526204 CD5P06127 495 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 SEC11BP0C7V7 166 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 CEACAM21Q3KPI0 293 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 TMEM88Q6PEY1 159 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 Q6ZPA2 131 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 MRPL21Q7Z2W9 205 aaKnown RBP18.28■□□□□ 0.52
VPS28-205ENST00000526204 ERGIC1Q969X5 290 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 SIGLEC12Q96PQ1 595 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 C9orf172C9J069 976 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 MPPED1O15442 326 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 DIRAS3O95661 229 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 CCNOP22674 350 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 FGF12P61328 243 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 LPAL2Q16609 132 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 Q6ZRG5 221 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 TUSC5Q8IXB3 177 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 OR11L1Q8NGX0 322 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 WNT2BQ93097 391 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 RNF122Q9H9V4 155 aa18.28■□□□□ 0.52
VPS28-205ENST00000526204 A0A096LPE4 126 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 A0A1W2PPZ6 126 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 C5orf49A4QMS7 147 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 PVALBP20472 110 aaPredicted RBP18.27■□□□□ 0.52
VPS28-205ENST00000526204 IL32P24001 234 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 DVL1P1P54792 670 aaPredicted RBP18.27■□□□□ 0.52
VPS28-205ENST00000526204 FAM76BQ5HYJ3 339 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 ZDHHC23Q8IYP9 409 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 ADAT1Q9BUB4 502 aaKnown RBP18.27■□□□□ 0.52
VPS28-205ENST00000526204 CALHM2Q9HA72 323 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 PLA2G2EQ9NZK7 142 aa18.27■□□□□ 0.52
VPS28-205ENST00000526204 C3orf85A0A1B0GTC6 90 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 ZNF724A8MTY0 619 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 C21orf140B9A014 251 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 HLA-HP01893 362 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 TK1P04183 234 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 GLAP06280 429 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 BCL3P20749 454 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 ARR3P36575 388 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 HAAOP46952 286 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 MKXQ8IYA7 352 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 COMMD1Q8N668 190 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 TMEM105Q8N8V8 129 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 OPA3Q9H6K4 179 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 CDS2O95674 445 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 CELA3AP09093 270 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 SFTA3P0C7M3 94 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 RFC3P40938 356 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 GNMTQ14749 295 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 MPV17LQ2QL34 196 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 IGSF11Q5DX21 431 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms