RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 ACER2Q5QJU3 275 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 AVPI1Q5T686 147 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 PEAR1Q5VY43 1037 aaPredicted RBP9.56□□□□□ -0.88
HDAC9-228ENST00000524023 CPEB3Q8NE35 698 aaKnown RBP9.56□□□□□ -0.88
HDAC9-228ENST00000524023 SECTM1Q8WVN6 248 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 CPNE4Q96A23 557 aaPredicted RBP9.56□□□□□ -0.88
HDAC9-228ENST00000524023 TP53RKQ96S44 253 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 PRDM14Q9GZV8 571 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 PARPBPQ9NWS1 579 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 P4HTMQ9NXG6 502 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 FBXO9Q9UK97 447 aaPredicted RBP9.56□□□□□ -0.88
HDAC9-228ENST00000524023 TCFL5Q9UL49 500 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 MRPS18CQ9Y3D5 142 aaKnown RBP9.56□□□□□ -0.88
HDAC9-228ENST00000524023 TMED3Q9Y3Q3 217 aa9.56□□□□□ -0.88
HDAC9-228ENST00000524023 FREM1Q5H8C1 2179 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 PINLYPA6NC86 204 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 COLCA2A8K830 154 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 PPYP01298 95 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 GLAP06280 429 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 GFRA1P56159 465 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 MIDNQ504T8 468 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 IGSF11Q5DX21 431 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 SLC25A26Q70HW3 274 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 UBALD2Q8IYN6 164 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 BATF2Q8N1L9 274 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 COMMD1Q8N668 190 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 DMBX1Q8NFW5 382 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 OR4D5Q8NGN0 318 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 POM121Q96HA1 1249 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 SCRT1Q9BWW7 348 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 PLSCR2Q9NRY7 297 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 LUZP4Q9P127 313 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 RCL1Q9Y2P8 373 aaKnown RBP9.55□□□□□ -0.88
HDAC9-228ENST00000524023 KPTNQ9Y664 436 aa9.55□□□□□ -0.88
HDAC9-228ENST00000524023 B4E171 279 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 RPL36A-HNRNPH2H7BZ11 118 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 MPPED1O15442 326 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 NME2P1O60361 137 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 CER1O95813 267 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 IGHV3-9P01782 118 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 TSPAN7P41732 249 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 CYB561P49447 251 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 PPT1P50897 306 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 NOVA1P51513 510 aaKnown RBP9.54□□□□□ -0.88
HDAC9-228ENST00000524023 UCP2P55851 309 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 NHLH2Q02577 135 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 COLCA1Q6ZS62 124 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 SLC35G3Q8N808 338 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 Q8NFD4 153 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 HPSE2Q8WWQ2 592 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 TMEM45BQ96B21 275 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 PRO3102Q9H379 93 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 BIN3Q9NQY0 253 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 PCSK5Q92824 1860 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 C3orf85A0A1B0GTC6 90 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 RPL35P42766 123 aaKnown RBP9.54□□□□□ -0.88
HDAC9-228ENST00000524023 CAMLGP49069 296 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 FHITP49789 147 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 AKR1D1P51857 326 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 ZNF616Q08AN1 781 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 HMGN3Q15651 99 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 GUK1Q16774 197 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 NRN1LQ496H8 165 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 SLC23A3Q6PIS1 610 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 MEX3BQ6ZN04 569 aaKnown RBP9.54□□□□□ -0.88
HDAC9-228ENST00000524023 ETV3LQ6ZN32 361 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 SH3BGRL3Q9H299 93 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 ESRP2Q9H6T0 727 aaKnown RBP9.54□□□□□ -0.88
HDAC9-228ENST00000524023 SMCO4Q9NRQ5 59 aa9.54□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A10PA6NDY2 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A18PA6NE21 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A16PA6NEW6 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A20PA6NIJ5 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A8PA6NJQ4 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A7PA6NKC0 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A22PA8MWA6 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A12PA8MX19 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A5PA8MXJ8 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A23PA8MXZ1 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 F10P00742 488 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A15PP0C7V4 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A13PP0C7W8 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A14PP0C7W9 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM90A24PP0C7X0 464 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 BCL3P20749 454 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 PAX6P26367 422 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 GNRHRP30968 328 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FOXO1Q12778 655 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 GNMTQ14749 295 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 DCAF12Q5T6F0 453 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 Q6ZS49 121 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 FAM185AQ8N0U4 392 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 OR56B2PQ8NGI1 322 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 EXTL1Q92935 676 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 TMEM222Q9H0R3 208 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 RNF122Q9H9V4 155 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 SLC7A10Q9NS82 523 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 C19orf12Q9NSK7 152 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 ATPIF1Q9UII2 106 aa9.53□□□□□ -0.88
HDAC9-228ENST00000524023 NOSIPQ9Y314 301 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms