RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 VPS29Q9UBQ0 182 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 IKZF2Q9UKS7 526 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 OSGIN2Q9Y236 505 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 ZNF106Q9H2Y7 1883 aaKnown RBP4.72□□□□□ -1.65
NUP54-218ENST00000515460 POLEQ07864 2286 aa4.72□□□□□ -1.65
NUP54-218ENST00000515460 TRRAPQ9Y4A5 3859 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TRBV5-3A0A0A0MS03 114 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TRAV34A0A0B4J273 112 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TRAV25A0A0B4J276 109 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 A0A0G2JN53 185 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TRBV7-9A0A0J9YWB2 115 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ANKRD20A5PA0PJZ0 165 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 RNF222A6NCQ9 220 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 GGT3PA6NGU5 568 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR2AG2A6NM03 316 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 INAFM1C9JVW0 142 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 FXYD1O00168 92 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TNFRSF11BO00300 401 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ZNF593O00488 134 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 PEX12O00623 359 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 PIP5K1BO14986 540 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CREBL2O60519 120 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 RAD51DO75771 328 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 NDUFB8O95169 186 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CDRT1O95170 752 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR6A2O95222 327 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TSPAN13O95857 204 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 IFNA5P01569 189 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 AMBPP02760 352 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 RLN1P04808 185 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 FABP3P05413 133 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CD5P06127 495 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 SMIM10L1P0DMW3 83 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 COX6B1P14854 86 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 FABP4P15090 132 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TPSB2P20231 275 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 HRH2P25021 359 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 EPHA2P29317 976 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR10J1P30954 320 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 S100A7P31151 101 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ARRB2P32121 409 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 BDKRB1P46663 353 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 LGALS7P47929 136 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 SLC6A8P48029 635 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CAV2P51636 162 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 AKR1C2P52895 323 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 MLF1P58340 268 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CSNK2A1P68400 391 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 NAAAQ02083 359 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 PAX5Q02548 391 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 MLLT11Q13015 90 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 PMS2P11Q13670 270 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 C1DQ13901 141 aaKnown RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 EBPQ15125 230 aaKnown RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 TPSAB1Q15661 275 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 NSDHLQ15738 373 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 UBE2V2Q15819 145 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 MEP1BQ16820 701 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 PGGHGQ32M88 737 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 C5orf47Q569G3 176 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 COA6Q5JTJ3 125 aaKnown RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 SPIN3Q5JUX0 258 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TMEM225Q6GV28 225 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ADNP2Q6IQ32 1131 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 KRTAP5-11Q6L8G4 156 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ENPP6Q6UWR7 440 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 B3GLCTQ6Y288 498 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 SERPINA9Q86WD7 417 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ZGRF1Q86YA3 2104 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 C9orf40Q8IXQ3 194 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 TMEM183AQ8IXX5 376 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 SLC35G3Q8N808 338 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 NHLRC2Q8NBF2 726 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CSNK2A3Q8NEV1 391 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR51S1Q8NGJ8 323 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR4P4Q8NGL7 312 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR9I1Q8NGQ6 314 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR5AK3PQ8NH89 298 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR1L3Q8NH93 324 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 FAM110BQ8TC76 370 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 SLC7A13Q8TCU3 470 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 GPX8Q8TED1 209 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CASTOR1Q8WTX7 329 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 NUDCD2Q8WVJ2 157 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 NRGNQ92686 78 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 BCL2L2Q92843 193 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 SMIM10Q96HG1 83 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 OR4K3Q96R72 315 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 IL4I1Q96RQ9 567 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 FNDC11Q9BVV2 318 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CACNG6Q9BXT2 260 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 MTHFD2LQ9H903 347 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 EXOSC4Q9NPD3 245 aaKnown RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 B3GAT2Q9NPZ5 323 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 MSRB1Q9NZV6 116 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 CACFD1Q9UGQ2 172 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 ZNF230Q9UIE0 474 aaPredicted RBP4.71□□□□□ -1.66
NUP54-218ENST00000515460 VAX2Q9UIW0 290 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 RHBDD3Q9Y3P4 386 aa4.71□□□□□ -1.66
NUP54-218ENST00000515460 PKP3Q9Y446 797 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms