RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PSG4Q00888 419 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 SLC3A1Q07837 685 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 AQP6Q13520 282 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 TRIP10Q15642 601 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 CLEC12AQ5QGZ9 265 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 C10orf128Q5T292 105 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 FAM27BQ5VT28 67 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 ZNF774Q6NX45 483 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 FAHD2BQ6P2I3 314 aaPredicted RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 LEG1Q6P5S2 330 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 DPY19L2P2Q6ZN68 376 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 ADCK1Q86TW2 530 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 DHFR2Q86XF0 187 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 WDFY1Q8IWB7 410 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 C1orf174Q8IYL3 243 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR5AS1Q8N127 324 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 FGFRL1Q8N441 504 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 TEX29Q8N6K0 151 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 CSNK1G2-AS1Q8NCQ2 148 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR2Z1Q8NG97 314 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR52E2Q8NGJ4 325 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR5L1Q8NGL2 311 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR4K13Q8NH42 304 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR51F2Q8NH61 342 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 NPRL2Q8WTW4 380 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 LIPHQ8WWY8 451 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 PTP4A1Q93096 173 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 CCDC124Q96CT7 223 aaKnown RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 RASD2Q96D21 266 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 RAB39BQ96DA2 213 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 CMBLQ96DG6 245 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 FAHD2AQ96GK7 314 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 PITX2Q99697 317 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 GAL3ST1Q99999 423 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 SOSTQ9BQB4 213 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 HCAR1Q9BXC0 346 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 MRPL13Q9BYD1 178 aaKnown RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR2H1Q9GZK4 316 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 OR2J1Q9GZK6 312 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 SYT4Q9H2B2 425 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 GORASP2Q9H8Y8 452 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 REEP1Q9H902 201 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 POLE4Q9NR33 117 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 ZNF275Q9NSD4 429 aaPredicted RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 DCAF13Q9NV06 445 aaKnown RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 TREM2Q9NZC2 230 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 PTTG3PQ9NZH4 202 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 ABCD2Q9UBJ2 740 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 SPATA2Q9UM82 520 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 FBN1P35555 2871 aaKnown RBP2.89□□□□□ -1.95
NUP54-212ENST00000513248 NOTCH1P46531 2555 aa2.89□□□□□ -1.95
NUP54-212ENST00000513248 PRRC2AP48634 2157 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 STAB1Q9NY15 2570 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 IGKV1D-43A0A0B4J1Z2 117 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 A0A0U1RQK1 487 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ZNF320A2RRD8 509 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OR6C6A6NF89 314 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 GGT3PA6NGU5 568 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RIIAD1A6NNX1 92 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 F5H5K5 113 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 H3BN98 237 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SLC33A1O00400 549 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 CDC42EP2O14613 210 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 IMPA2O14732 288 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 FFAR1O14842 300 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 GYG2O15488 501 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 TCF21O43680 179 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 E2F6O75461 281 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SRSF10O75494 262 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 MPZL1O95297 269 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 IFNGP01579 166 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 IGHV1-46P01743 117 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 MSMBP08118 114 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 MMP7P09237 267 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 SBK2P0C263 348 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 FOLR2P14207 255 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ZNF250P15622 560 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ATP6V1B2P21281 511 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 PAICSP22234 425 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 CALB2P22676 271 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 IGFBP5P24593 272 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ACKR3P25106 362 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 FCGR2BP31994 310 aaPredicted RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 FCGR2CP31995 323 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 MPV17P39210 176 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OMPP47874 163 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RGS6P49758 472 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 SNU13P55769 128 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 DGCR6Q14129 220 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ENDOGQ14249 297 aaKnown RBP2.88□□□□□ -1.95
NUP54-212ENST00000513248 HIST3H3Q16695 136 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RFX4Q33E94 735 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 MESTQ5EB52 335 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 FAM120AOSQ5T036 256 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 OTPQ5XKR4 325 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 ACSM5Q6NUN0 579 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RPL13AP3Q6NVV1 102 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 DNM1P46Q6ZS02 220 aa2.88□□□□□ -1.95
NUP54-212ENST00000513248 RFPL4BQ6ZWI9 263 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms