RNA–Protein interactions for RNA: ENST00000509637.6

RAB40C-202, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-202ENST00000509637 SPACA5Q96QH8 159 aa12.62□□□□□ -0.39
RAB40C-202ENST00000509637 MNTQ99583 582 aa12.62□□□□□ -0.39
RAB40C-202ENST00000509637 HMG20AQ9NP66 347 aa12.62□□□□□ -0.39
RAB40C-202ENST00000509637 LOC107986453A0A1B0GWG9 222 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 METTL15A6NJ78 407 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 OR2F2O95006 317 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 OR2H2O95918 312 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 PF4P02776 101 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 PRKACAP17612 351 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 POU3F4P49335 361 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 NANOS3P60323 173 aaKnown RBP12.61□□□□□ -0.39
RAB40C-202ENST00000509637 TP53I3Q53FA7 332 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 TPTE2P1Q5T6R2 138 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 KDM4DQ6B0I6 523 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 HEPN1Q6WQI6 88 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 RBMXL1Q96E39 390 aaKnown RBP12.61□□□□□ -0.39
RAB40C-202ENST00000509637 BORCS8Q96FH0 119 aa12.61□□□□□ -0.39
RAB40C-202ENST00000509637 RCC1LQ96I51 464 aaKnown RBP12.61□□□□□ -0.39
RAB40C-202ENST00000509637 UBE2J1Q9Y385 318 aaPredicted RBP12.61□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A18PA6NE21 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A16PA6NEW6 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A20PA6NIJ5 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 LINC01548A6NM66 108 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A9PA6NNJ1 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A12PA8MX19 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A5PA8MXJ8 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 BUB1B-PAK6H3BSN5 160 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 SNRNP70P08621 437 aaKnown RBP12.6□□□□□ -0.39
RAB40C-202ENST00000509637 CCDC159P0C7I6 412 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A15PP0C7V4 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A13PP0C7W8 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A14PP0C7W9 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FAM90A24PP0C7X0 464 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 ATF1P18846 271 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 LMO1P25800 156 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 SLC35A2P78381 396 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 PDZK1IP1Q13113 114 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FLOT2Q14254 428 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 HLA-DRB5Q30154 266 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 C16orf82Q7Z2V1 217 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 FGGYQ96C11 551 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 NOL4LQ96MY1 436 aaPredicted RBP12.6□□□□□ -0.39
RAB40C-202ENST00000509637 PPIL3Q9H2H8 161 aaKnown RBP12.6□□□□□ -0.39
RAB40C-202ENST00000509637 ING3Q9NXR8 418 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 H2AFY2Q9P0M6 372 aaPredicted RBP12.6□□□□□ -0.39
RAB40C-202ENST00000509637 GSTK1Q9Y2Q3 226 aa12.6□□□□□ -0.39
RAB40C-202ENST00000509637 DNAJC8O75937 253 aaPredicted RBP12.59□□□□□ -0.39
RAB40C-202ENST00000509637 IGHV3-7P01780 117 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 KRT8P05787 483 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 OR2T7P0C7T2 308 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 CDK5R1Q15078 307 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 AMIGO2Q86SJ2 522 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 TRAPPC6BQ86SZ2 158 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 CCDC197Q8NCU1 140 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 DNAAF1Q8NEP3 725 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 OR51A4Q8NGJ6 313 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 DNAJC9Q8WXX5 260 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 STMN2Q93045 179 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 EME1Q96AY2 570 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 TEX12Q9BXU0 123 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 FRRS1LQ9P0K9 344 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 ZNF581Q9P0T4 197 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 LINC00527Q9UJ94 153 aa12.59□□□□□ -0.39
RAB40C-202ENST00000509637 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.59□□□□□ -0.392e-6■■■□□ 15.6
RAB40C-202ENST00000509637 A0A087X0M5 115 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 A0A1B0GX30 115 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 LEUTXA8MZ59 168 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 ALDOBP05062 364 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 HTR1FP30939 366 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 THBS3P49746 956 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 RBP2P50120 134 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 ATP1B3P54709 279 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 MTCP1P56278 107 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 ACTR3P61158 418 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 C9orf152Q5JTZ5 239 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 RTN4RL2Q86UN3 420 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 OSR2Q8N2R0 312 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 OR10H4Q8NGA5 316 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 OR5D18Q8NGL1 313 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 OR2G2Q8NGZ5 317 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 LEAP2Q969E1 77 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 DUX3Q96PT4 197 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 COMMD4Q9H0A8 199 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 PLEKHA1Q9HB21 404 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 KRT84Q9NSB2 600 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 TAS2R3Q9NYW6 316 aa12.58□□□□□ -0.4
RAB40C-202ENST00000509637 WARS2Q9UGM6 360 aaKnown RBP12.58□□□□□ -0.4
RAB40C-202ENST00000509637 TENM3Q9P273 2699 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 ODAMA1E959 279 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 J3QRE1 110 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 SLC33A1O00400 549 aaPredicted RBP12.57□□□□□ -0.4
RAB40C-202ENST00000509637 GATBO75879 557 aaKnown RBP12.57□□□□□ -0.4
RAB40C-202ENST00000509637 SULT1C4O75897 302 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 KDM4BO94953 1096 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 FAM107AO95990 144 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 OR3A4PP47883 348 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 KHDC1LQ5JSQ8 128 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 FAM53AQ6NSI3 398 aaPredicted RBP12.57□□□□□ -0.4
RAB40C-202ENST00000509637 C8orf86Q6ZUL3 223 aa12.57□□□□□ -0.4
RAB40C-202ENST00000509637 UTS2BQ765I0 119 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms