RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 RPL36A-HNRNPH2H7BZ11 118 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 TRAF3IP2O43734 574 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 PPYP01298 95 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 PRSS12P56730 875 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 PCOLCEQ15113 449 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 RTL8BQ17RB0 113 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 OR5C1Q8NGR4 320 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 ADGRG7Q96K78 797 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 SPSB2Q99619 263 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 SLC2A8Q9NY64 477 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 A0A1W2PPH5 198 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 NAAAQ02083 359 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 S100A7AQ86SG5 101 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 LPAR3Q9UBY5 353 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 URGCP-MRPS24S4R325 110 aa9.42□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM218A2RU14 115 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 DHRS7CA6NNS2 312 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 LY86O95711 162 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 ZNF816Q0VGE8 651 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM104Q8NE00 496 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 OR5A2Q8NGI9 324 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 OR13G1Q8NGZ3 307 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 S1PR3Q99500 378 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 MED9Q9NWA0 146 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 SPAG17Q6Q759 2223 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 FAM24AA6NFZ4 105 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 ZNF727A8MUV8 499 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 PPP1R2P9O14990 202 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 OR2A4O95047 310 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 PRF1P14222 555 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 NDUFB7P17568 137 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 PTAFRP25105 342 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 MPGP29372 298 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 RBM11P57052 281 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 VASH2Q86V25 355 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 OR8U1Q8NH10 309 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 MRPL24Q96A35 216 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 OR2A7Q96R45 310 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 GPR132Q9UNW8 380 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 hCG_1809904A0A1W2PP81 198 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 A0A1W2PPE2 198 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 A0A1W2PR64 198 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 A0A1W2PRV1 198 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 DCAF10Q5QP82 559 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM54Q969K7 222 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 UQCC1Q9NVA1 299 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 SHISA7A6NL88 538 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 H3BP45 60 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 M0R296 226 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 FCGR3AP08637 254 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 PSG4Q00888 419 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 SSX9Q7RTT3 188 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 DDA1Q9BW61 102 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 SEC11CQ9BY50 192 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 HS3ST3B1Q9Y662 390 aa9.41□□□□□ -0.9
LIMCH1-205ENST00000503057 C17orf51A8MQB3 221 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 MBPP02686 304 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 FGF7P21781 194 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 ZXDAP98168 799 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TRIP6Q15654 476 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 C10orf128Q5T292 105 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 OVCH2Q7RTZ1 564 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 SLC26A1Q9H2B4 701 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 CXXC4Q9H2H0 198 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 ENSAO43768 121 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 CRYABP02511 175 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM267Q0VDI3 215 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 IL24Q13007 206 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TSPO2Q5TGU0 170 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 RBMXL3Q8N7X1 1067 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 C15orf54Q8N8G6 183 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 OR4F5Q8NH21 305 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 OR4F4Q96R69 305 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TTTY12Q9BZ98 90 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 SLC35B3Q9H1N7 401 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 UBE2L5PA0A1B0GUS4 154 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 PRR19A6NJB7 356 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM14DPA8MWL7 114 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 TIAF1O95411 115 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 CDS2O95674 445 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 NMBP08949 121 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 ACKR3P25106 362 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 ASCL1P50553 236 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 H2BFSP57053 126 aa9.4□□□□□ -0.9
LIMCH1-205ENST00000503057 CD82P27701 267 aa9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 SUB1P53999 127 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 SPEM2Q0P670 501 aa9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 BORCS7Q96B45 105 aa9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM96BQ9Y3D0 163 aa9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 PLXNA4Q9HCM2 1894 aa9.4□□□□□ -0.91
LIMCH1-205ENST00000503057 DUXBA0A1W2PPF3 345 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 A0A1W2PR80 420 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF891A8MT65 544 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 S100A8P05109 93 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 SCN2AQ99250 2005 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 H7BYZ3 331 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 LYZL6O75951 148 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 VDAC1P21796 283 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 BTCP35070 178 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 LPAR6P43657 344 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms