RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ATP1B3P54709 279 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 P2RX3P56373 397 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 KRTAP10-11P60412 298 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 EFNB1P98172 346 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 IL18R1Q13478 541 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 DNAL1Q4LDG9 190 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 DEFB121Q5J5C9 76 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 UTF1Q5T230 341 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 ABHD12Q8N2K0 398 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 WFDC9Q8NEX5 89 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 OR5D18Q8NGL1 313 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 STMN2Q93045 179 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 SPACA5Q96QH8 159 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 ZNF286AQ9HBT8 521 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 DPM3Q9P2X0 92 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 GSTK1Q9Y2Q3 226 aa10.09□□□□□ -0.79
SKA1-205ENST00000494518 TSSC4Q9Y5U2 329 aaPredicted RBP10.09□□□□□ -0.79
SKA1-205ENST00000494518 TRBV2A0A0J9YWF9 115 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 G3V2T6 193 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 CYB5AP00167 134 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 ATP6V1E1P36543 226 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 POLR2IP36954 125 aaKnown RBP10.08□□□□□ -0.8
SKA1-205ENST00000494518 GLIPR1P48060 266 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 RBP2P50120 134 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 MTCP1P56278 107 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 SLC35A2P78381 396 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 SCN1BQ07699 218 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 AESQ08117 197 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 RBM39Q14498 530 aaKnown RBP10.08□□□□□ -0.8
SKA1-205ENST00000494518 ZBTB49Q6ZSB9 765 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 AMIGO2Q86SJ2 522 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 ENTHD1Q8IYW4 607 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 FGGYQ96C11 551 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 CIB1Q99828 191 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 LIN7BQ9HAP6 207 aa10.08□□□□□ -0.8
SKA1-205ENST00000494518 EXOSC4Q9NPD3 245 aaKnown RBP10.08□□□□□ -0.8
SKA1-205ENST00000494518 WARS2Q9UGM6 360 aaKnown RBP10.08□□□□□ -0.8
SKA1-205ENST00000494518 UBE2J1Q9Y385 318 aaPredicted RBP10.08□□□□□ -0.8
SKA1-205ENST00000494518 TRGV10A0A0A0MS01 117 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 IGKV1-12A0A0C4DH73 117 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 H3BUI4 141 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 ST8SIA5O15466 376 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 OR2H2O95918 312 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 IGKV1D-12P01611 117 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 AMY1AP04745 511 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 AMY2AP04746 511 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 OR2T7P0C7T2 308 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 UBCP0CG48 685 aaKnown RBP10.07□□□□□ -0.8
SKA1-205ENST00000494518 ZNF20P17024 532 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 ATF1P18846 271 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 HTR1FP30939 366 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 OR3A4PP47883 348 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 ZNF85Q03923 595 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 LINC01559Q495D7 138 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 VAX1Q5SQQ9 334 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 KDM4DQ6B0I6 523 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 FAM220AQ7Z4H9 259 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 Q8IYB0 196 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 OR4X2Q8NGF9 303 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 OR10AC1Q8NH08 325 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 SLC7A6OSQ96CW6 309 aaPredicted RBP10.07□□□□□ -0.8
SKA1-205ENST00000494518 AKR1E2Q96JD6 320 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 ZNF649Q9BS31 505 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 GAL3ST2Q9H3Q3 398 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 RIBC2Q9H4K1 309 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 INPP5EQ9NRR6 644 aa10.07□□□□□ -0.8
SKA1-205ENST00000494518 LEUTXA8MZ59 168 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 SULT1C4O75897 302 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OR2F2O95006 317 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 IGHV3-7P01780 117 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OCM2P0CE71 109 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OCMP0CE72 109 aaPredicted RBP10.06□□□□□ -0.8
SKA1-205ENST00000494518 ZNF44P15621 663 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 NFYBP25208 207 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 BRS3P32247 399 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 BDH1Q02338 343 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 PDZK1IP1Q13113 114 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 KPNB1Q14974 876 aaKnown RBP10.06□□□□□ -0.8
SKA1-205ENST00000494518 ATXN7L3Q14CW9 347 aaPredicted RBP10.06□□□□□ -0.8
SKA1-205ENST00000494518 ZNF146Q15072 292 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 ATP6AP1Q15904 470 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 TPTE2P1Q5T6R2 138 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 HEPN1Q6WQI6 88 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 C18orf65Q6ZTR6 163 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 C16orf82Q7Z2V1 217 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 ZNF329Q86UD4 541 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OR13C9Q8NGT0 318 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OR2G2Q8NGZ5 317 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 ZNF596Q8TC21 504 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 PP6455Q8WZ26 134 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 EME1Q96AY2 570 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 OPALINQ96PE5 141 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 RBM14Q96PK6 669 aaKnown RBP10.06□□□□□ -0.8
SKA1-205ENST00000494518 PPIL3Q9H2H8 161 aaKnown RBP10.06□□□□□ -0.8
SKA1-205ENST00000494518 NEK6Q9HC98 313 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 HMG20AQ9NP66 347 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 GLS2Q9UI32 602 aa10.06□□□□□ -0.8
SKA1-205ENST00000494518 ODAMA1E959 279 aa10.05□□□□□ -0.8
SKA1-205ENST00000494518 HSPB6O14558 160 aa10.05□□□□□ -0.8
SKA1-205ENST00000494518 TOR1AO14656 332 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms