RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 VEGFCP49767 419 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 GNB2P62879 340 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 RPS27AP62979 156 aaKnown RBP13.12□□□□□ -0.31
HPS4-216ENST00000493455 LCN2P80188 198 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 QRFPP83859 136 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 EDDM3AQ14507 147 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 IL13RA2Q14627 380 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 ZNF146Q15072 292 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 ESCO2Q56NI9 601 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 PAN3Q58A45 887 aaKnown RBP13.12□□□□□ -0.31
HPS4-216ENST00000493455 BRICD5Q6PL45 260 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 MED30Q96HR3 178 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 Q96M66 194 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 URM1Q9BTM9 101 aaKnown RBP13.12□□□□□ -0.31
HPS4-216ENST00000493455 ATG5Q9H1Y0 275 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 NDUFA13Q9P0J0 144 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 SLC25A10Q9UBX3 287 aaPredicted RBP13.12□□□□□ -0.31
HPS4-216ENST00000493455 CLN8Q9UBY8 286 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 RAB22AQ9UL26 194 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 MAB21L2Q9Y586 359 aa13.12□□□□□ -0.31
HPS4-216ENST00000493455 MYO9AB2RTY4 2548 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 ARHGAP32A7KAX9 2087 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 A0A075B6Q4 140 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 SIGLEC5O15389 551 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 WNT2P09544 360 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 ZNF182P17025 639 aaPredicted RBP13.11□□□□□ -0.31
HPS4-216ENST00000493455 CPT2P23786 658 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 CFPP27918 469 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 LMO4P61968 165 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 ATXN7L3Q14CW9 347 aaPredicted RBP13.11□□□□□ -0.31
HPS4-216ENST00000493455 LRRC10Q5BKY1 277 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 Q6P435 159 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 BPIFB2Q8N4F0 458 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 ZNF561Q8N587 486 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 DYNC2LI1Q8TCX1 351 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 DGCR14Q96DF8 476 aaKnown RBP13.11□□□□□ -0.31
HPS4-216ENST00000493455 SDSLQ96GA7 329 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 SSBP3Q9BWW4 388 aaPredicted RBP13.11□□□□□ -0.31
HPS4-216ENST00000493455 LPAR5Q9H1C0 372 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 ABRACLQ9P1F3 81 aa13.11□□□□□ -0.31
HPS4-216ENST00000493455 YLPM1P49750 1951 aaKnown RBP13.11□□□□□ -0.31
HPS4-216ENST00000493455 A0A096LNT2 108 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 TMEM82A0PJX8 343 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 MEX3AA1L020 520 aaKnown RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 F5H0A9 414 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 SLC33A1O00400 549 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 TNFRSF13BO14836 293 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 LDLRAD4O15165 306 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 FSTL3O95633 263 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 BLVRBP30043 206 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 EDDM3BP56851 147 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 LOXL1Q08397 574 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 GRK1Q15835 563 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 MPV17LQ2QL34 196 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 ATPAF1Q5TC12 328 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 SAMD12Q8N8I0 201 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 DTX3Q8N9I9 347 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 SUMF2Q8NBJ7 301 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 CHST4Q8NCG5 386 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 Q8NFD4 153 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 OR4S1Q8NGB4 309 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 AP3S1Q92572 193 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 MRPS24Q96EL2 167 aaKnown RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 CYYR1Q96J86 154 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 NEDD4LQ96PU5 975 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 DNTTIP1Q9H147 329 aa13.1□□□□□ -0.31
HPS4-216ENST00000493455 MAP1AP78559 2803 aaPredicted RBP13.1□□□□□ -0.31
HPS4-216ENST00000493455 A0A0A6YYD4 124 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 UBE2QL1A1L167 161 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 SOCS1O15524 211 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 RGS5O15539 181 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 PSPNO60542 156 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 MADCAM1Q13477 382 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 NHLRC3Q5JS37 347 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 WDR25Q64LD2 544 aaPredicted RBP13.09□□□□□ -0.31
HPS4-216ENST00000493455 RAB12Q6IQ22 244 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 MZT2AQ6P582 158 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 GDPD3Q7L5L3 318 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 LINC00596Q86U02 117 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 RTN4RL2Q86UN3 420 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 TPRX1Q8N7U7 411 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 OR4M1Q8NGD0 313 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 PPP1R35Q8TAP8 253 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 DYRK2Q92630 601 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 PHF21AQ96BD5 680 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 SNX22Q96L94 193 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 DPCDQ9BVM2 203 aaPredicted RBP13.09□□□□□ -0.31
HPS4-216ENST00000493455 C6orf62Q9GZU0 229 aaPredicted RBP13.09□□□□□ -0.31
HPS4-216ENST00000493455 RHBDL2Q9NX52 303 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 CCDC59Q9P031 241 aaKnown RBP13.09□□□□□ -0.31
HPS4-216ENST00000493455 KAAG1Q9UBP8 84 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 SPATA2Q9UM82 520 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 PEX16Q9Y5Y5 336 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 ETV7Q9Y603 341 aa13.09□□□□□ -0.31
HPS4-216ENST00000493455 ABCA2Q9BZC7 2435 aa13.08□□□□□ -0.32
HPS4-216ENST00000493455 TRAV24A0A0B4J272 114 aa13.08□□□□□ -0.32
HPS4-216ENST00000493455 METTL21EPA6NDL7 271 aa13.08□□□□□ -0.32
HPS4-216ENST00000493455 FAM25AB3EWG3 89 aa13.08□□□□□ -0.32
HPS4-216ENST00000493455 FAM25CB3EWG5 89 aa13.08□□□□□ -0.32
HPS4-216ENST00000493455 FAM25GB3EWG6 89 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms