RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 GUCA2AQ02747 115 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 KRTAP21-3Q3LHN1 58 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 NCR3LG1Q68D85 454 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 AWAT2Q6E213 333 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 BATF2Q8N1L9 274 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 BPIFB2Q8N4F0 458 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 Q8NFD4 153 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 OR51T1Q8NGJ9 327 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 ZNF418Q8TF45 676 aaPredicted RBP12.1□□□□□ -0.47
LIMS3-205ENST00000487150 TMEM203Q969S6 136 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 JMJD8Q96S16 334 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 CST11Q9H112 138 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 METTL8Q9H825 291 aaKnown RBP12.1□□□□□ -0.47
LIMS3-205ENST00000487150 SPACA1Q9HBV2 294 aa12.1□□□□□ -0.47
LIMS3-205ENST00000487150 MRPS28Q9Y2Q9 187 aaKnown RBP12.1□□□□□ -0.47
LIMS3-205ENST00000487150 A0A087WXM4 84 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 hADV38S2A0JD32 116 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 F8VVB4 439 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 F8VWA3 439 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 PIN1P1O15428 100 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 OR2H2O95918 312 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 CSN2P05814 226 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 MYL9P24844 172 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 CEBPDP49716 269 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-205ENST00000487150 RPS25P62851 125 aaKnown RBP12.09□□□□□ -0.47
LIMS3-205ENST00000487150 MEF2CQ06413 473 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-205ENST00000487150 GRK1Q15835 563 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 MPV17LQ2QL34 196 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 C1orf229Q6ZS94 237 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-205ENST00000487150 FAM185AQ8N0U4 392 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 OSR2Q8N2R0 312 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 PCGF1Q9BSM1 259 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 SUCNR1Q9BXA5 334 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 ING4Q9UNL4 249 aa12.09□□□□□ -0.47
LIMS3-205ENST00000487150 TRAV40A0A0B4J280 105 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 PDCD5O14737 125 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 DEGS1O15121 323 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 HTR3BO95264 441 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 AVPP01185 164 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 RBP4P02753 201 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 LMO1P25800 156 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 ERP29P30040 261 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 SNU13P55769 128 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 EDDM3BP56851 147 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 RBM11P57052 281 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 SLC22A6Q4U2R8 563 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 CRIP3Q6Q6R5 217 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 CD200R1LQ6Q8B3 271 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 METAP1DQ6UB28 335 aaPredicted RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 RBMS3Q6XE24 437 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 USP43Q70EL4 1123 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 OR6M1Q8NGM8 313 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 MUL1Q969V5 352 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 ORAI1Q96D31 301 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 MS4A7Q9GZW8 240 aaPredicted RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 SIRPDQ9H106 197 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 IFT22Q9H7X7 185 aa12.08□□□□□ -0.48
LIMS3-205ENST00000487150 UNKLQ9H9P5 680 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 YLPM1P49750 1951 aaKnown RBP12.08□□□□□ -0.48
LIMS3-205ENST00000487150 TRDV1A0A1B0GX56 115 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 MAGEA13PA6NCF6 341 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A10PA6NDY2 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A18PA6NE21 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A16PA6NEW6 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A20PA6NIJ5 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A8PA6NJQ4 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A7PA6NKC0 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A22PA8MWA6 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A12PA8MX19 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A5PA8MXJ8 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A23PA8MXZ1 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 TCF21O43680 179 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FCN3O75636 299 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 CDRT1O95170 752 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A15PP0C7V4 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A13PP0C7W8 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A14PP0C7W9 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM90A24PP0C7X0 464 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 MMP9P14780 707 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 SERPINA2P20848 420 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 CALRP27797 417 aaKnown RBP12.07□□□□□ -0.48
LIMS3-205ENST00000487150 P2RX3P56373 397 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 ARF6P62330 175 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 EDDM3AQ14507 147 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 SSX1Q16384 188 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 TIMM50Q3ZCQ8 353 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 FAM27D1Q5T7N8 215 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 GLIPR1L1Q6UWM5 242 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 C17orf107Q6ZR85 190 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 C9orf139Q6ZV77 190 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 ZNF696Q9H7X3 374 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 IL36RNQ9UBH0 155 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 ST3GAL6Q9Y274 331 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 SF3B6Q9Y3B4 125 aaKnown RBP12.07□□□□□ -0.48
LIMS3-205ENST00000487150 LINC00312Q9Y6C7 94 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 ZFHX3Q15911 3703 aa12.07□□□□□ -0.48
LIMS3-205ENST00000487150 TRAV1-2A0A0B4J238 106 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 SIRPB1O00241 398 aa12.06□□□□□ -0.48
LIMS3-205ENST00000487150 OR7C1O76099 320 aaPredicted RBP12.06□□□□□ -0.48
LIMS3-205ENST00000487150 TFF1P04155 84 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms