RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ERVK11-1P61568 191 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 NDPQ00604 133 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 KLF5Q13887 457 aaPredicted RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 EIF2B1Q14232 305 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 RBMS2Q15434 407 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 CD300EQ496F6 205 aaPredicted RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 LCN12Q6JVE5 192 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 HEPN1Q6WQI6 88 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 ZNF600Q6ZNG1 722 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 OAFQ86UD1 273 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 RTN4RL2Q86UN3 420 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 NRMQ8IXM6 262 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 LYPD1Q8N2G4 141 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 Q8N402 240 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 POM121L12Q8N7R1 296 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TMEM104Q8NE00 496 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 OR9G4Q8NGQ1 327 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TRMT10AQ8TBZ6 339 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 PIGCQ92535 297 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 LEAP2Q969E1 77 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SPTSSAQ969W0 71 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 RPEQ96AT9 228 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 S1PR3Q99500 378 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SORT1Q99523 831 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 ELOVL1Q9BW60 279 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 GGTLC1Q9BX51 225 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 CHST6Q9GZX3 395 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 FN3KQ9H479 309 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 WDR55Q9H6Y2 383 aaPredicted RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 NRIP3Q9NQ35 241 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 RASL12Q9NYN1 266 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 PSMC3IPQ9P2W1 217 aaPredicted RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 IL36RNQ9UBH0 155 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SLC23A1Q9UHI7 598 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 SLC22A13Q9Y226 551 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TP53TG1Q9Y2A0 90 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 MRPS28Q9Y2Q9 187 aaKnown RBP3.54□□□□□ -1.84
USP4-209ENST00000475873 MPC1Q9Y5U8 109 aa3.54□□□□□ -1.84
USP4-209ENST00000475873 TRAV6A0A075B6T7 132 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 hADV38S2A0JD32 116 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 LGALS9O00182 355 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 DLGAP1O14490 977 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 COPEO14579 308 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 NOS1APO75052 506 aaPredicted RBP3.53□□□□□ -1.84
USP4-209ENST00000475873 IL6P05231 212 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 S100A9P06702 114 aaKnown RBP3.53□□□□□ -1.84
USP4-209ENST00000475873 SLC2A2P11168 524 aaPredicted RBP3.53□□□□□ -1.84
USP4-209ENST00000475873 GPX2P18283 190 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 KRT4P19013 534 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 CEACAM3P40198 252 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 PAFAH1B1P43034 410 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 KIR2DS2P43631 304 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 REG1BP48304 166 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 MFAP2P55001 183 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SYNJ2BPP57105 145 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 GNG3P63215 75 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 RAB40BQ12829 278 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 COTL1Q14019 142 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 TIGD6Q17RP2 521 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 Q3ZCU0 254 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 KRBOX4Q5JUW0 171 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 LRIF1Q5T3J3 769 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 PGM2L1Q6PCE3 622 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 TBPL2Q6SJ96 375 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 Q6ZRM9 215 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 GDPD3Q7L5L3 318 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 KRT74Q7RTS7 529 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 DCXRQ7Z4W1 244 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 IZUMO1Q8IYV9 350 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SPARTQ8N0X7 666 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 CSNK2A3Q8NEV1 391 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 OR2AJ1Q8NGZ0 328 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 CMTM3Q96MX0 182 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 KCNJ15Q99712 375 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 COPS4Q9BT78 406 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SCRT1Q9BWW7 348 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SEBOXQ9HB31 216 aaPredicted RBP3.53□□□□□ -1.84
USP4-209ENST00000475873 THAP1Q9NVV9 213 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 OR6C3Q9NZP0 311 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 ZNF107Q9UII5 783 aaPredicted RBP3.53□□□□□ -1.84
USP4-209ENST00000475873 FBXL7Q9UJT9 491 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 BAG5Q9UL15 447 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SIGLEC7Q9Y286 467 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 IER3IP1Q9Y5U9 82 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 GMEB1Q9Y692 573 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 SELENOKQ9Y6D0 94 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 U3KQV3 271 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 FAT4Q6V0I7 4981 aa3.53□□□□□ -1.84
USP4-209ENST00000475873 IGHV4-4A0A075B6R2 117 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 LOC102724200A0A096LPH7 203 aaPredicted RBP3.52□□□□□ -1.85
USP4-209ENST00000475873 IGHV7-81A0A0B4J1V7 117 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 TRAV41A0A0B4J266 112 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 TVP23AA6NH52 213 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 KRTAP29-1A8MX34 341 aaPredicted RBP3.52□□□□□ -1.85
USP4-209ENST00000475873 EFCAB9A8MZ26 197 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 MAGEB3O15480 346 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 NXPH2O95156 264 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 TXNDC12O95881 172 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 TRBV12-3P01733 135 aa3.52□□□□□ -1.85
USP4-209ENST00000475873 SHBGP04278 402 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms