RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GRK1Q15835 563 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 PLA1AQ53H76 456 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ZBTB49Q6ZSB9 765 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF714Q96N38 554 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 PDCD1LG2Q9BQ51 273 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 TCF7L1Q9HCS4 588 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 LINC00312Q9Y6C7 94 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 hCG_1809904A0A1W2PP81 198 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 A0A1W2PPE2 198 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 A0A1W2PR64 198 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 A0A1W2PRV1 198 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 DPPA5A6NC42 116 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 OR2H2O95918 312 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 ARG1P05089 322 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 GABRR1P24046 479 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 GABRA5P31644 462 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 XAF1Q6GPH4 301 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 Q6P435 159 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 PARP16Q8N5Y8 322 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF676Q8N7Q3 588 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF184Q99676 751 aaPredicted RBP11.38□□□□□ -0.59
UPF3A-204ENST00000475218 COMMD4Q9H0A8 199 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 MMP27Q9H306 513 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 FOXJ3Q9UPW0 622 aa11.38□□□□□ -0.59
UPF3A-204ENST00000475218 A6NDX4 124 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 M0QZ24 198 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 SIRPB1O00241 398 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 MGST3O14880 152 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 TIMM23O14925 209 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 LMO1P25800 156 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 PEX2P28328 305 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 GDNFP39905 211 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 P2RX3P56373 397 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 DEFA6Q01524 100 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 RAB40BQ12829 278 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 IL18R1Q13478 541 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 CDK5R1Q15078 307 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 SPIN3Q5JUX0 258 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 UTF1Q5T230 341 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF529Q6P280 563 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 ZCCHC4Q9H5U6 513 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 TCF19Q9Y242 345 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 GSTK1Q9Y2Q3 226 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 TBL2Q9Y4P3 447 aaKnown RBP11.37□□□□□ -0.59
UPF3A-204ENST00000475218 KIAA2026Q5HYC2 2103 aa11.37□□□□□ -0.59
UPF3A-204ENST00000475218 IGHV2-26A0A0B4J1V2 119 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 hADV38S2A0JD32 116 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 ALX3O95076 343 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 FADS2O95864 444 aaKnown RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 ERP29P30040 261 aaKnown RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 LGALS4P56470 323 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 HABP2Q14520 560 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SSX2Q16385 188 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 FBLN7Q53RD9 439 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 TMEM219Q86XT9 240 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 OR13D1Q8NGV5 346 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 RPS4Y2Q8TD47 263 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 CFHR4Q92496 578 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 MALSU1Q96EH3 234 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 COQ2Q96H96 371 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 JAM3Q9BX67 310 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF702PQ9H963 129 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 INPP5EQ9NRR6 644 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SERTAD4Q9NUC0 356 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SIRT4Q9Y6E7 314 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SESN1Q9Y6P5 492 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 TET2Q6N021 2002 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 A0A0G2JK05 382 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 TMEM212A6NML5 194 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SNTNA6NMZ2 147 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 MPZL2O60487 215 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 CLIC3O95833 236 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 GLIPR1P48060 266 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 ETV1P50549 477 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 DYNC1I2Q13409 638 aaKnown RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 KISS1Q15726 138 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 Q6ZS46 218 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 SAXO1Q8IYX7 474 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 OR51A2Q8NGJ7 313 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 Q96MT0 163 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 NKX3-1Q99801 234 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 TMEM133Q9H2Q1 129 aa11.36□□□□□ -0.59
UPF3A-204ENST00000475218 RANBP3Q9H6Z4 567 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 FGF20Q9NP95 211 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-204ENST00000475218 CYB5AP00167 134 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 AESQ08117 197 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 FAM189A2Q15884 450 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 PRAMEF5Q5TYX0 476 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 Q8N2B8 174 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 KLHDC1Q8N7A1 406 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 OR4P4Q8NGL7 312 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 OR4C13Q8NGP0 309 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 OR5AK2Q8NH90 309 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 WIPF2Q8TF74 440 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-204ENST00000475218 CORO2AQ92828 525 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 FOXRED1Q96CU9 486 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-204ENST00000475218 EXOSC4Q9NPD3 245 aaKnown RBP11.35□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF581Q9P0T4 197 aa11.35□□□□□ -0.59
UPF3A-204ENST00000475218 UBE2J1Q9Y385 318 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-204ENST00000475218 RPL36Q9Y3U8 105 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms