RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SIRPB1O00241 398 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 PRB2P02812 416 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-210ENST00000472880 HTR1DP28221 377 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 ERP29P30040 261 aaKnown RBP15.88■□□□□ 0.13
COL9A3-210ENST00000472880 OR3A1P47881 315 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 ALDH3A2P51648 485 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 WIPF2Q8TF74 440 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-210ENST00000472880 FGGYQ96C11 551 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 OPALINQ96PE5 141 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 WNT10AQ9GZT5 417 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 GAL3ST2Q9H3Q3 398 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 EXOSC4Q9NPD3 245 aaKnown RBP15.88■□□□□ 0.13
COL9A3-210ENST00000472880 PCDHGB5Q9Y5G0 923 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 ORC6Q9Y5N6 252 aa15.88■□□□□ 0.13
COL9A3-210ENST00000472880 TRGV10A0A0A0MS01 117 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 DAPL1A0PJW8 107 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 SH2D1BO14796 132 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 ISG15P05161 165 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 BLCAPP62952 87 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 PDZK1IP1Q13113 114 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 TMEM95Q3KNT9 176 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 FBLN7Q53RD9 439 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 KCTD20Q7Z5Y7 419 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 OR4P4Q8NGL7 312 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 RNF166Q96A37 237 aaPredicted RBP15.87■□□□□ 0.13
COL9A3-210ENST00000472880 RFT1Q96AA3 541 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 MBOAT4Q96T53 435 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 HMG20AQ9NP66 347 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 FRRS1LQ9P0K9 344 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 GSTK1Q9Y2Q3 226 aa15.87■□□□□ 0.13
COL9A3-210ENST00000472880 FUOMA2VDF0 154 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 SLC16A6O15403 523 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 OR2H2O95918 312 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 HTR1AP08908 422 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 ARHGDIBP52566 201 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 OXLD1Q5BKU9 147 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 PRAMEF5Q5TYX0 476 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 OR52W1Q6IF63 320 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 Q6ZS46 218 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 PQLC1Q8N2U9 271 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 CBR4Q8N4T8 237 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 OR13C3Q8NGS6 347 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 ZNF596Q8TC21 504 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 CAPSLQ8WWF8 208 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 TRUB1Q8WWH5 349 aaKnown RBP15.86■□□□□ 0.13
COL9A3-210ENST00000472880 RNFT2Q96EX2 444 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 AKR1E2Q96JD6 320 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 NEK6Q9HC98 313 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 HHLA2Q9UM44 414 aa15.86■□□□□ 0.13
COL9A3-210ENST00000472880 ADARB2-AS1A8MUL3 147 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 FAM90A22PA8MWA6 464 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 PIN1P1O15428 100 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 MMP23AO75900 390 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 NANOS3P60323 173 aaKnown RBP15.85■□□□□ 0.13
COL9A3-210ENST00000472880 FDX2Q6P4F2 183 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 C16orf82Q7Z2V1 217 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 RTN4RL2Q86UN3 420 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 ABHD12Q8N2K0 398 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 OR5D18Q8NGL1 313 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 OR13C9Q8NGT0 318 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 HRASLS5Q96KN8 279 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 C9orf16Q9BUW7 83 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 DPM3Q9P2X0 92 aa15.85■□□□□ 0.13
COL9A3-210ENST00000472880 E9PQ18 207 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 KDM4BO94953 1096 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 ZNF44P15621 663 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 CDK2P24941 298 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 BRS3P32247 399 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 CCR9P51686 369 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 ZIK1Q3SY52 487 aaPredicted RBP15.84■□□□□ 0.13
COL9A3-210ENST00000472880 MEDAGQ5VYS4 303 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 HEPN1Q6WQI6 88 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 Q6ZPA2 131 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 OR10AC1Q8NH08 325 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 SGCDQ92629 289 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 MRPL48Q96GC5 212 aaKnown RBP15.84■□□□□ 0.13
COL9A3-210ENST00000472880 SPACA5Q96QH8 159 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 LIN7BQ9HAP6 207 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 TAS2R3Q9NYW6 316 aa15.84■□□□□ 0.13
COL9A3-210ENST00000472880 IGKV1-12A0A0C4DH73 117 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 A0A1W2PRX2 142 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 FAM172BPA6NC97 362 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 SNTNA6NMZ2 147 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 J3QLW9 94 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 IGKV1D-12P01611 117 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 ZNF19P17023 458 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 PTGFRP43088 359 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 BDH1Q02338 343 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 AESQ08117 197 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 BAIAP2L2Q6UXY1 529 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 ACBD7Q8N6N7 88 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 OR5AU1Q8NGC0 362 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 OR51A4Q8NGJ6 313 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 MRAPQ8TCY5 172 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 STMN2Q93045 179 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 C4orf36Q96KX1 117 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 OCSTAMPQ9BR26 566 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 COMMD4Q9H0A8 199 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 RHOFQ9HBH0 211 aa15.83■□□□□ 0.12
COL9A3-210ENST00000472880 NECAP2Q9NVZ3 263 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms