RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 OR10D3Q8NH80 312 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 OR14L1PQ8NHC6 308 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 SECTM1Q8WVN6 248 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 TMEM45BQ96B21 275 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 AKR1E2Q96JD6 320 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 TUBA4BQ9H853 241 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 LUZP4Q9P127 313 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 SDK2Q58EX2 2172 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 FAM221AA4D161 298 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 ZNF587BE7ETH6 402 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 CDS2O95674 445 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 TSPAN15O95858 294 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 RFPL3SP0C7P2 107 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 Q0VFX4 171 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 CLEC9AQ6UXN8 241 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 FBXW12Q6X9E4 464 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 PPP1R32Q7Z5V6 425 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 OR5L1Q8NGL2 311 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 OR11L1Q8NGX0 322 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 HLA-CQ95604 372 aa11.78□□□□□ -0.52
BRCA1-209ENST00000470026 FBXO9Q9UK97 447 aaPredicted RBP11.78□□□□□ -0.52
BRCA1-209ENST00000470026 RCL1Q9Y2P8 373 aaKnown RBP11.78□□□□□ -0.52
BRCA1-209ENST00000470026 SHANK1Q9Y566 2161 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 A0A1B0GW64 132 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 PPYP01298 95 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 IFNA4P05014 189 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 DUSP3P51452 185 aaPredicted RBP11.77□□□□□ -0.52
BRCA1-209ENST00000470026 RND3P61587 244 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 SRPXP78539 464 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 GUK1Q16774 197 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 RNF212Q495C1 297 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 PLCXD3Q63HM9 321 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 WDR5BQ86VZ2 330 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 CALHM1Q8IU99 346 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 TP53RKQ96S44 253 aa11.77□□□□□ -0.52
BRCA1-209ENST00000470026 RPL36A-HNRNPH2H7BZ11 118 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 MPPED1O15442 326 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 TDGF1P13385 188 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 SLC35G3Q8N808 338 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 PIGCQ92535 297 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 TMEM56Q96MV1 263 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 USB1Q9BQ65 265 aaKnown RBP11.77□□□□□ -0.53
BRCA1-209ENST00000470026 C19orf12Q9NSK7 152 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 TMEM56-RWDD3S4R434 201 aa11.77□□□□□ -0.53
BRCA1-209ENST00000470026 C3orf85A0A1B0GTC6 90 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 TRDCB7Z8K6 153 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 PRSS44E7EML9 344 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 K7N7A8 449 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 PHF1O43189 567 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-209ENST00000470026 NME2P1O60361 137 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 RPL35P42766 123 aaKnown RBP11.76□□□□□ -0.53
BRCA1-209ENST00000470026 GFRA1P56159 465 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 HERV-K104P61576 105 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 CTAG1AP78358 180 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 HABP2Q14520 560 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-209ENST00000470026 SAXO1Q8IYX7 474 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 ZNF611Q8N823 705 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 CPEB3Q8NE35 698 aaKnown RBP11.76□□□□□ -0.53
BRCA1-209ENST00000470026 CPNE4Q96A23 557 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-209ENST00000470026 BOD1Q96IK1 185 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 ABHD14BQ96IU4 210 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 TMEM222Q9H0R3 208 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 DEPPQ9NTK1 212 aa11.76□□□□□ -0.53
BRCA1-209ENST00000470026 IGKV3D-15A0A087WSY6 115 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 GNRHRP30968 328 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 PPT1P50897 306 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 NHLH2Q02577 135 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 WIPI1Q5MNZ9 446 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 ETV3LQ6ZN32 361 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 HIST1H2BAQ96A08 127 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 TAAR9Q96RI9 348 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 CLCC1Q96S66 551 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 PARPBPQ9NWS1 579 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 P4HTMQ9NXG6 502 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 COL27A1Q8IZC6 1860 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 CLEC18AA5D8T8 446 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 CCDC85CA6NKD9 419 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 B4E171 279 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 NAPSAO96009 420 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 TSPAN7P41732 249 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 NPBWR2P48146 333 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 CAMLGP49069 296 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 SLC25A26Q70HW3 274 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 CLEC18CQ8NCF0 446 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 SFT2D1Q8WV19 159 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 REPIN1Q9BWE0 567 aaKnown RBP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 LINC00470Q9BZP3 86 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 FGF23Q9GZV9 251 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 PARP12Q9H0J9 701 aaKnown RBP11.75□□□□□ -0.53
BRCA1-209ENST00000470026 SH3BGRL3Q9H299 93 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 PRO3102Q9H379 93 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 Q9N2K0 584 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 FAM86C1Q9NVL1 165 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 ARID1AO14497 2285 aa11.75□□□□□ -0.53
BRCA1-209ENST00000470026 PCSK5Q92824 1860 aa11.74□□□□□ -0.53
BRCA1-209ENST00000470026 NKX2-6A6NCS4 301 aa11.74□□□□□ -0.53
BRCA1-209ENST00000470026 TUSC2O75896 110 aa11.74□□□□□ -0.53
BRCA1-209ENST00000470026 OR7C1O76099 320 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-209ENST00000470026 CFIP05156 583 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms