RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PDCD6O75340 191 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TMEM33P57088 247 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 SPATA46Q5T0L3 261 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MEX3BQ6ZN04 569 aaKnown RBP16.42■□□□□ 0.22
VIM-203ENST00000469543 MED12LQ86YW9 2145 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 ZPBPQ9BS86 351 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 REPIN1Q9BWE0 567 aaKnown RBP16.42■□□□□ 0.22
VIM-203ENST00000469543 PIGMQ9H3S5 423 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TAF9BQ9HBM6 251 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TMEM100Q9NV29 134 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 PARPBPQ9NWS1 579 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 EDARQ9UNE0 448 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MED19A0JLT2 244 aaPredicted RBP16.41■□□□□ 0.22
VIM-203ENST00000469543 DNASE2O00115 360 aaPredicted RBP16.41■□□□□ 0.22
VIM-203ENST00000469543 BET1O15155 118 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 SYNGR1O43759 233 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 MBPP02686 304 aaPredicted RBP16.41■□□□□ 0.22
VIM-203ENST00000469543 TMEM187Q14656 261 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 PPA1Q15181 289 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 TMEM164Q5U3C3 297 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.41■□□□□ 0.22
VIM-203ENST00000469543 ADAMTS17Q8TE56 1095 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 SPSB4Q96A44 273 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 TP53RKQ96S44 253 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 TLNRD1Q9H1K6 362 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 RGCCQ9H4X1 137 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 KIAA2026Q5HYC2 2103 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 IGKV3D-15A0A087WSY6 115 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 K7EPK0 472 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 SLC33A1O00400 549 aaPredicted RBP16.41■□□□□ 0.22
VIM-203ENST00000469543 CDK2AP1O14519 115 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 SCTP09683 121 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 RNFT1Q5M7Z0 435 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 RTL6Q6ICC9 239 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 FAM71E2Q8N5Q1 922 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 CCDC54Q8NEL0 328 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 PRDM14Q9GZV8 571 aa16.41■□□□□ 0.22
VIM-203ENST00000469543 DIDO1Q9BTC0 2240 aaKnown RBP16.4■□□□□ 0.22
VIM-203ENST00000469543 TMEM218A2RU14 115 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 TPD52L2O43399 206 aaKnown RBP16.4■□□□□ 0.22
VIM-203ENST00000469543 MT-CO3P00414 261 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 FUT3P21217 361 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 IL32P24001 234 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 LPAR6P43657 344 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 ZNF100Q8IYN0 542 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 C17orf78Q8N4C9 275 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 TMEM45BQ96B21 275 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 C12orf4Q9NQ89 552 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 FBXL17Q9UF56 701 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 ZNF732B4DXR9 585 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 PHF1O43189 567 aaPredicted RBP16.4■□□□□ 0.22
VIM-203ENST00000469543 DEDDO75618 318 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 DTYMKP23919 212 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 PUSL1Q8N0Z8 303 aaKnown RBP16.4■□□□□ 0.22
VIM-203ENST00000469543 APH1AQ96BI3 265 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 NAA60Q9H7X0 242 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 B4GALT7Q9UBV7 327 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 AMDHD2Q9Y303 409 aa16.4■□□□□ 0.22
VIM-203ENST00000469543 GTF3C1Q12789 2109 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 CACNA1GO43497 2377 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 MEOX1P50221 254 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 NAAAQ02083 359 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 ZNF169Q14929 603 aaPredicted RBP16.39■□□□□ 0.21
VIM-203ENST00000469543 MRPL21Q7Z2W9 205 aaKnown RBP16.39■□□□□ 0.21
VIM-203ENST00000469543 IL22RA1Q8N6P7 574 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 EXTL1Q92935 676 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 PRRX2Q99811 253 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 KCNIP3Q9Y2W7 256 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 A0A1B0GW55 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 SYNGR4O95473 234 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 IFNA21P01568 189 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L2P0CJ85 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L3P0CJ86 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L4P0CJ87 422 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L5P0CJ88 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L6P0CJ89 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4L7P0CJ90 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 C20orf204Q6ZNR8 217 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 TSNAXQ99598 290 aaKnown RBP16.39■□□□□ 0.21
VIM-203ENST00000469543 DUX4Q9UBX2 424 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 LPAR3Q9UBY5 353 aa16.39■□□□□ 0.21
VIM-203ENST00000469543 CACNA1DQ01668 2161 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 PQLC2LA1A4F0 135 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 M0R296 226 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 SRSF6Q13247 344 aaKnown RBP16.38■□□□□ 0.21
VIM-203ENST00000469543 HES3Q5TGS1 186 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 SUMF1Q8NBK3 374 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 MSI2Q96DH6 328 aaKnown RBP16.38■□□□□ 0.21
VIM-203ENST00000469543 NKX6-2Q9C056 277 aaPredicted RBP16.38■□□□□ 0.21
VIM-203ENST00000469543 ZNF286AQ9HBT8 521 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 RFNGQ9Y644 331 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 ATMQ13315 3056 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 HS3ST1O14792 307 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 ATG12O94817 140 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 NXPH3O95157 252 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 FHITP49789 147 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 PMP22Q01453 160 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 GPR87Q9BY21 358 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 TREM1Q9NP99 234 aa16.38■□□□□ 0.21
VIM-203ENST00000469543 ZNF391Q9UJN7 358 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms