RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 OR52W1Q6IF63 320 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 HEPN1Q6WQI6 88 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 RTN4RL2Q86UN3 420 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 RDH10Q8IZV5 341 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 OR4X2Q8NGF9 303 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 C10orf35Q96D05 121 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 RBM14Q96PK6 669 aaKnown RBP18.02■□□□□ 0.48
USP4-208ENST00000464168 WARS2Q9UGM6 360 aaKnown RBP18.02■□□□□ 0.48
USP4-208ENST00000464168 HHLA2Q9UM44 414 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 POMPQ9Y244 141 aa18.02■□□□□ 0.48
USP4-208ENST00000464168 KIAA2026Q5HYC2 2103 aa18.02■□□□□ 0.47
USP4-208ENST00000464168 LOC107986453A0A1B0GWG9 222 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 SH2D7A6NKC9 451 aaPredicted RBP18.01■□□□□ 0.47
USP4-208ENST00000464168 LEUTXA8MZ59 168 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 APOL3O95236 402 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 DUS4LO95620 317 aaKnown RBP18.01■□□□□ 0.47
USP4-208ENST00000464168 PRKACAP17612 351 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 GDNFP39905 211 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 POU3F4P49335 361 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 SNU13P55769 128 aaKnown RBP18.01■□□□□ 0.47
USP4-208ENST00000464168 MTCP1P56278 107 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 SPIN3Q5JUX0 258 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 ZNF596Q8TC21 504 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 BCAS4Q8TDM0 211 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 PP6455Q8WZ26 134 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 CORO2AQ92828 525 aa18.01■□□□□ 0.47
USP4-208ENST00000464168 RNF166Q96A37 237 aaPredicted RBP18.01■□□□□ 0.47
USP4-208ENST00000464168 ADAT3Q96EY9 351 aaPredicted RBP18.01■□□□□ 0.47
USP4-208ENST00000464168 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.01■□□□□ 0.47
USP4-208ENST00000464168 TRGV10A0A0A0MS01 117 aa18■□□□□ 0.47
USP4-208ENST00000464168 FAM172BPA6NC97 362 aa18■□□□□ 0.47
USP4-208ENST00000464168 SIRPB1O00241 398 aa18■□□□□ 0.47
USP4-208ENST00000464168 CD34P28906 385 aa18■□□□□ 0.47
USP4-208ENST00000464168 KIR3DL2P43630 455 aa18■□□□□ 0.47
USP4-208ENST00000464168 CDC42P60953 191 aa18■□□□□ 0.47
USP4-208ENST00000464168 EGFEM1PQ0D2K5 195 aa18■□□□□ 0.47
USP4-208ENST00000464168 GAL3ST2Q9H3Q3 398 aa18■□□□□ 0.47
USP4-208ENST00000464168 HMG20AQ9NP66 347 aa18■□□□□ 0.47
USP4-208ENST00000464168 GLS2Q9UI32 602 aa18■□□□□ 0.47
USP4-208ENST00000464168 GYG2O15488 501 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 CYB5AP00167 134 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 HTR1FP30939 366 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 HOXD3P31249 432 aaPredicted RBP17.99■□□□□ 0.47
USP4-208ENST00000464168 GLIPR1P48060 266 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 ISL1P61371 349 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 PDZK1IP1Q13113 114 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 KDM4DQ6B0I6 523 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 LINC00482Q8N8I6 264 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 OR10H4Q8NGA5 316 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 ZNF286AQ9HBT8 521 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 TAS2R3Q9NYW6 316 aa17.99■□□□□ 0.47
USP4-208ENST00000464168 IGKV1-12A0A0C4DH73 117 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 G3V2T6 193 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 LY6LH3BQJ8 138 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 BUB1B-PAK6H3BSN5 160 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 SH2D1BO14796 132 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 OR2H2O95918 312 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 IGKV1D-12P01611 117 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 UBCP0CG48 685 aaKnown RBP17.98■□□□□ 0.47
USP4-208ENST00000464168 ATF1P18846 271 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 ARHGDIBP52566 201 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 AESQ08117 197 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 KHDC1LQ5JSQ8 128 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 TPTE2P1Q5T6R2 138 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 GSTK1Q9Y2Q3 226 aa17.98■□□□□ 0.47
USP4-208ENST00000464168 CLIC3O95833 236 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 PRKACBP22694 351 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 LMO1P25800 156 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 CEACAM3P40198 252 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 KPNB1Q14974 876 aaKnown RBP17.97■□□□□ 0.47
USP4-208ENST00000464168 HLA-DRB5Q30154 266 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 DNAL1Q4LDG9 190 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 UTF1Q5T230 341 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 UTS2BQ765I0 119 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 CREB3L1Q96BA8 519 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 FGGYQ96C11 551 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 EXOSC4Q9NPD3 245 aaKnown RBP17.97■□□□□ 0.47
USP4-208ENST00000464168 GNG8Q9UK08 70 aa17.97■□□□□ 0.47
USP4-208ENST00000464168 FUOMA2VDF0 154 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 VSIG8P0DPA2 414 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 POLR2IP36954 125 aaKnown RBP17.96■□□□□ 0.47
USP4-208ENST00000464168 ZNF85Q03923 595 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 ATP6AP1Q15904 470 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 TP53I3Q53FA7 332 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 C9orf152Q5JTZ5 239 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 LHFPL2Q6ZUX7 228 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 RNF144BQ7Z419 303 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 OSR2Q8N2R0 312 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 RFT1Q96AA3 541 aa17.96■□□□□ 0.47
USP4-208ENST00000464168 SLC7A6OSQ96CW6 309 aaPredicted RBP17.96■□□□□ 0.47
USP4-208ENST00000464168 A0A087X0M5 115 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 A0A1B0GX30 115 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 ODAMA1E959 279 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 M0QZK8 103 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 TOR1AO14656 332 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 ATP6V1E1P36543 226 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 PRRX1P54821 245 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 TMEM244Q5VVB8 128 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 ETV3LQ6ZN32 361 aa17.95■□□□□ 0.46
USP4-208ENST00000464168 MRPL41Q8IXM3 137 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms