RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 GABRA2P47869 451 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 RIDAP52758 137 aaKnown RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 HCCSP53701 268 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 DLX1P56177 255 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 ACTR3P61158 418 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 ESRRGP62508 458 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 KLRD1Q13241 179 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 KPNB1Q14974 876 aaKnown RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 PTGES3Q15185 160 aaKnown RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 ZNF829Q3KNS6 432 aaPredicted RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 ZNF684Q5T5D7 378 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 PLCXD3Q63HM9 321 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 HAGHLQ6PII5 290 aaPredicted RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 ACP7Q6ZNF0 438 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 MOB3CQ70IA8 216 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 COMMD2Q86X83 199 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 ANKRD13BQ86YJ7 626 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 POC1AQ8NBT0 407 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 TMEM185AQ8NFB2 350 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 OR5K1Q8NHB7 308 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 OR51E1Q8TCB6 317 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 DUS3LQ96G46 650 aaKnown RBP5.89□□□□□ -1.47
USP54-208ENST00000461520 FAM234AQ9H0X4 552 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 MOB1AQ9H8S9 216 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 GPR84Q9NQS5 396 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 ENPP5Q9UJA9 477 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 POMPQ9Y244 141 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 PIGLQ9Y2B2 252 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PRD5 423 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PRF3 423 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PRM7 423 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 CCDC182A6NF36 153 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 ANKRD61A6NGH8 418 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 RFPL4AA6NLU0 287 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 DHRS7CA6NNS2 312 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 PRR32B1ATL7 298 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 LOC110117498-PIK3R3F6TDL0 507 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 RFPL4AL1F8VTS6 287 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 H0YAE9 185 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 SLC1A7O00341 560 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 DLGAP1O14490 977 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 PRKYO43930 277 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 NOS1APO75052 506 aaPredicted RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 SRSF10O75494 262 aaKnown RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 INMTO95050 263 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 TTRP02766 147 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 MRPL3P09001 348 aaKnown RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 PGA5P0DJD9 388 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 HAAOP46952 286 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 DAPP51397 102 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 CXCR4P61073 352 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 RPL31P62899 125 aaKnown RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 PRB3Q04118 309 aaPredicted RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 TWIST1Q15672 202 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 AANATQ16613 207 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 SMIM21Q3B7S5 101 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 CLVS2Q5SYC1 327 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 NXNL2Q5VZ03 156 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 TMEM42Q69YG0 159 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 SLC35E4Q6ICL7 350 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 HCP5Q6MZN7 132 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 FAHD1Q6P587 224 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 ZNF322Q6U7Q0 402 aaPredicted RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 Q6ZSR3 168 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 MEPCEQ7L2J0 689 aaKnown RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 ZNF573Q86YE8 665 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 ELMOD2Q8IZ81 293 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 FAM185AQ8N0U4 392 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 PNKDQ8N490 385 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 ZNF561Q8N587 486 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 OR51G2Q8NGK0 314 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 SNX22Q96L94 193 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 CNN2Q99439 309 aaKnown RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 PPA2Q9H2U2 334 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 ELL3Q9HB65 397 aaPredicted RBP5.88□□□□□ -1.47
USP54-208ENST00000461520 IKZF2Q9UKS7 526 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 COPS3Q9UNS2 423 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 POLDIP2Q9Y2S7 368 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 R4GMQ9 66 aa5.88□□□□□ -1.47
USP54-208ENST00000461520 hCG_1809904A0A1W2PP81 198 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PPE2 198 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PR64 198 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PRV1 198 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 PQLC2LA1A4F0 135 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 H3BUX3 64 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 J3QT63 122 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 SYNGR1O43759 233 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 ANGPTL7O43827 346 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 TMEM225BP0DP42 221 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 MPZP25189 248 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 PRDX2P32119 198 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 KIR2DS4P43632 304 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 CAPZA1P52907 286 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 EFNB1P98172 346 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 MFGE8Q08431 387 aaPredicted RBP5.87□□□□□ -1.47
USP54-208ENST00000461520 FHL3Q13643 280 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 C2orf68Q2NKX9 166 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 DMRTC1Q5HYR2 192 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 BCL2L15Q5TBC7 163 aa5.87□□□□□ -1.47
USP54-208ENST00000461520 AADACL4Q5VUY2 407 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms