RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 NKX3-1Q99801 234 aaPredicted RBP11.97□□□□□ -0.49
USP39-206ENST00000448971 Q9H521 79 aa11.97□□□□□ -0.49
USP39-206ENST00000448971 HMG20AQ9NP66 347 aa11.97□□□□□ -0.49
USP39-206ENST00000448971 TMEM138Q9NPI0 162 aa11.97□□□□□ -0.49
USP39-206ENST00000448971 PRKDCP78527 4128 aaKnown RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 IGHV1-69DA0A0B4J2H0 117 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 CENPVL3A0A0U1RRI6 287 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 MDFIC2A0A1B0GVS7 189 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 A0A1W2PPK0 400 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 M0R1W7 72 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 SIRPB1O00241 398 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 IGHV1-69P01742 117 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 ZNF44P15621 663 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 FSTP19883 344 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 CRHBPP24387 322 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 MAPK3P27361 379 aaPredicted RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 ZNF93P35789 620 aaPredicted RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 BPIFB3P59826 476 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 RPS11P62280 158 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP39-206ENST00000448971 PRB3Q04118 309 aaPredicted RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 FOXL1Q12952 345 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 GRK1Q15835 563 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 PDLIM3Q53GG5 364 aaPredicted RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 CRIP3Q6Q6R5 217 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 C9orf139Q6ZV77 190 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 OR8H2Q8N162 312 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 PPP1R35Q8TAP8 253 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 THRSPQ92748 146 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 SNX22Q96L94 193 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 S100A13Q99584 98 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 ZNF184Q99676 751 aaPredicted RBP11.96□□□□□ -0.49
USP39-206ENST00000448971 CHST6Q9GZX3 395 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 RHOFQ9HBH0 211 aa11.96□□□□□ -0.49
USP39-206ENST00000448971 DOCK11Q5JSL3 2073 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 DNAJC9-AS1A6NH13 148 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 K7N7A8 449 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 ZNF737O75373 536 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 HSMCR30P0CW71 290 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 OR3A4PP47883 348 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 DLX1P56177 255 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 ACSM1Q08AH1 577 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 BAMBIQ13145 260 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 KLRD1Q13241 179 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 ZNF146Q15072 292 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 RSU1Q15404 277 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 RBM48Q5RL73 367 aaKnown RBP11.95□□□□□ -0.5
USP39-206ENST00000448971 NCR3LG1Q68D85 454 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 UFD1Q92890 307 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 ZNF48Q96MX3 618 aaPredicted RBP11.95□□□□□ -0.5
USP39-206ENST00000448971 DUX5Q96PT3 197 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 TMED9Q9BVK6 235 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 DUSP21Q9H596 190 aa11.95□□□□□ -0.5
USP39-206ENST00000448971 METTL8Q9H825 291 aaKnown RBP11.95□□□□□ -0.5
USP39-206ENST00000448971 LSM2Q9Y333 95 aaKnown RBP11.95□□□□□ -0.5
USP39-206ENST00000448971 SOX21Q9Y651 276 aaPredicted RBP11.95□□□□□ -0.5
USP39-206ENST00000448971 TRAV8-7A0A075B6U6 113 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PRD5 423 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PRF3 423 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PRM7 423 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 TMEM82A0PJX8 343 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 MEX3AA1L020 520 aaKnown RBP11.94□□□□□ -0.5
USP39-206ENST00000448971 MAGEA13PA6NCF6 341 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 SH2D1BO14796 132 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 OR2H2O95918 312 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 MAS1P04201 325 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 ALDOBP05062 364 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 CD1AP06126 327 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 CCL3L1P16619 93 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 IGFBP3P17936 291 aaPredicted RBP11.94□□□□□ -0.5
USP39-206ENST00000448971 MTNR1BP49286 362 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 BMXP51813 675 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 SCN1BQ07699 218 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 ZNF273Q14593 569 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 IRF3Q14653 427 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 DEFB112Q30KQ8 113 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 PRSS48Q7RTY5 328 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 JAGN1Q8N5M9 183 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 Q8N7P7 452 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 TPRX1Q8N7U7 411 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 PXT1Q8NFP0 134 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 OR5D13Q8NGL4 314 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 OR10K1Q8NGX5 313 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 TBC1D15Q8TC07 691 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 DERL3Q96Q80 235 aa11.94□□□□□ -0.5
USP39-206ENST00000448971 TRBV5-7A0A0A0MS05 114 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 hCG_1809904A0A1W2PP81 198 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PPE2 198 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PR64 198 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 A0A1W2PRV1 198 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 RNASEK-C17orf49H0YIS7 233 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 PSPNO60542 156 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 HTR3BO95264 441 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 CSTBP04080 98 aaKnown RBP11.93□□□□□ -0.5
USP39-206ENST00000448971 SERPINA2P20848 420 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 PRTN3P24158 256 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 TGFBR2P37173 567 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 DEFA6Q01524 100 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 LIPKQ5VXJ0 399 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 TMEM200BQ69YZ2 307 aa11.93□□□□□ -0.5
USP39-206ENST00000448971 METAP1DQ6UB28 335 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms