RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PQLC1Q8N2U9 271 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 OR52I1Q8NGK6 324 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 OR4C13Q8NGP0 309 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 Q96MT0 163 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 PDCD1LG2Q9BQ51 273 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 TCF19Q9Y242 345 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 SESN1Q9Y6P5 492 aa16.74■□□□□ 0.27
SDC1-205ENST00000447124 SH2D1BO14796 132 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 MPZL2O60487 215 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 FADS2O95864 444 aaKnown RBP16.73■□□□□ 0.27
SDC1-205ENST00000447124 P2RX3P56373 397 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 RAB40BQ12829 278 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 HERPUD1Q15011 391 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 PDLIM3Q53GG5 364 aaPredicted RBP16.73■□□□□ 0.27
SDC1-205ENST00000447124 FAM110DQ8TAY7 271 aaPredicted RBP16.73■□□□□ 0.27
SDC1-205ENST00000447124 COMMD4Q9H0A8 199 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 RANBP3Q9H6Z4 567 aaPredicted RBP16.73■□□□□ 0.27
SDC1-205ENST00000447124 RAB18Q9NP72 206 aa16.73■□□□□ 0.27
SDC1-205ENST00000447124 PRKDCP78527 4128 aaKnown RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 IGHV2-26A0A0B4J1V2 119 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 A0A0G2JK05 382 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 ALX3O95076 343 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 GTF2A1P52655 376 aaPredicted RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 ZP1P60852 638 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 SMN1Q16637 294 aaKnown RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 LIAT1Q6ZQX7 453 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 TMEM219Q86XT9 240 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 SAXO1Q8IYX7 474 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 PARP16Q8N5Y8 322 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 C11orf44Q8N8P7 122 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 CFHR4Q92496 578 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 MRPL48Q96GC5 212 aaKnown RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 NKX3-1Q99801 234 aaPredicted RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 TMEM133Q9H2Q1 129 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 ZNF702PQ9H963 129 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 EXOSC4Q9NPD3 245 aaKnown RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 INPP5EQ9NRR6 644 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 GLS2Q9UI32 602 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 RPL36Q9Y3U8 105 aaKnown RBP16.72■□□□□ 0.27
SDC1-205ENST00000447124 HILPDAQ9Y5L2 63 aa16.72■□□□□ 0.27
SDC1-205ENST00000447124 WBP4O75554 376 aaKnown RBP16.71■□□□□ 0.27
SDC1-205ENST00000447124 OCM2P0CE71 109 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 OCMP0CE72 109 aaPredicted RBP16.71■□□□□ 0.27
SDC1-205ENST00000447124 LIMS3P0CW19 117 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 LIMS4P0CW20 117 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 GDNFP39905 211 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 GLIPR1P48060 266 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 SCN1BQ07699 218 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 AESQ08117 197 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 IL18R1Q13478 541 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 HABP2Q14520 560 aaPredicted RBP16.71■□□□□ 0.27
SDC1-205ENST00000447124 KLHDC1Q8N7A1 406 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 OR5AK2Q8NH90 309 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 OR2T6Q8NHC8 308 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 CORO2AQ92828 525 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 FOXRED1Q96CU9 486 aaPredicted RBP16.71■□□□□ 0.27
SDC1-205ENST00000447124 CDCA4Q9BXL8 241 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 NPFFR1Q9GZQ6 430 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 SERTAD4Q9NUC0 356 aa16.71■□□□□ 0.27
SDC1-205ENST00000447124 UBE2J1Q9Y385 318 aaPredicted RBP16.71■□□□□ 0.27
SDC1-205ENST00000447124 TMEM212A6NML5 194 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 BAG2O95816 211 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 DYNLT3P51808 116 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 GBX2P52951 348 aaPredicted RBP16.7■□□□□ 0.26
SDC1-205ENST00000447124 CDK5R1Q15078 307 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 KISS1Q15726 138 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 MINOS1Q5TGZ0 78 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 Q6ZS46 218 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 SERPINA12Q8IW75 414 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 Q8N2B8 174 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 RPS4Y2Q8TD47 263 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 RGP1Q92546 391 aaPredicted RBP16.7■□□□□ 0.26
SDC1-205ENST00000447124 COQ2Q96H96 371 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 MYCBPQ99417 103 aaPredicted RBP16.7■□□□□ 0.26
SDC1-205ENST00000447124 NEK6Q9HC98 313 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 FGF20Q9NP95 211 aaPredicted RBP16.7■□□□□ 0.26
SDC1-205ENST00000447124 MINOS1-NBL1R4GNA1 71 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 TGP01266 2768 aa16.7■□□□□ 0.26
SDC1-205ENST00000447124 EBAG9O00559 213 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 CSF1P09603 554 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 TMEM225BP0DP42 221 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 KLHL22Q53GT1 634 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 UTF1Q5T230 341 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 PRAMEF5Q5TYX0 476 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 LPCAT4Q643R3 524 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 XAF1Q6GPH4 301 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 ZNF529Q6P280 563 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 C11orf88Q6PI97 169 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 Q6ZTK2 550 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 TRAPPC6BQ86SZ2 158 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 OR5D14Q8NGL3 314 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 OR4P4Q8NGL7 312 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 CLEC7AQ9BXN2 247 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 ABCB10Q9NRK6 738 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 DHDHQ9UQ10 334 aa16.69■□□□□ 0.26
SDC1-205ENST00000447124 TET2Q6N021 2002 aaPredicted RBP16.69■□□□□ 0.26
SDC1-205ENST00000447124 FAM90A22PA8MWA6 464 aa16.68■□□□□ 0.26
SDC1-205ENST00000447124 SLC33A1O00400 549 aaPredicted RBP16.68■□□□□ 0.26
SDC1-205ENST00000447124 SULT1B1O43704 296 aa16.68■□□□□ 0.26
SDC1-205ENST00000447124 HCKP08631 526 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 161.8 ms