RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PNKDQ8N490 385 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 ZFP41Q8N8Y5 198 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF485Q8NCK3 441 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 OR51A2Q8NGJ7 313 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 CHIAQ9BZP6 476 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 CHST6Q9GZX3 395 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 SCN3BQ9NY72 215 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 ERGIC3Q9Y282 383 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 TENM1Q9UKZ4 2725 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 BTBD17A6NE02 478 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 SIRPB1O00241 398 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 MGST3O14880 152 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 PSPNO60542 156 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 OR2H2O95918 312 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 ALDOBP05062 364 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF728P0DKX0 622 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF44P15621 663 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 CFPP27918 469 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 IER3P46695 156 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 MTNR1BP49286 362 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 WNT4P56705 351 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 SCN1BQ07699 218 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 MIDNQ504T8 468 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 C6orf141Q5SZD1 244 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 ASPHD2Q6ICH7 369 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 HCP5Q6MZN7 132 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 C11orf42Q8N5U0 333 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 PXT1Q8NFP0 134 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 OR4S1Q8NGB4 309 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 OR52N4Q8NGI2 321 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 OR13C5Q8NGS8 318 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 TNFAIP8L1Q8WVP5 186 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 FAM192AQ9GZU8 254 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 TMEM138Q9NPI0 162 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 FKBP14Q9NWM8 211 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 CKLFQ9UBR5 152 aa12.41□□□□□ -0.42
LIMS3-201ENST00000437679 TRBV5-5A0A0J9YX44 114 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 PNMA8CA0A1B0GUJ8 204 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 FUOMA2VDF0 154 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 FAM181BA6NEQ2 426 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 C17orf98A8MV24 154 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 PTGES3LE9PB15 166 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 GABRPO00591 440 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 IGHV4-59P01825 116 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 RBP4P02753 201 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 CDK1P06493 297 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 COX7A1P24310 79 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 BDKRB2P30411 391 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 OR3A1P47881 315 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 DLX6P56179 175 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 Q499Y3 187 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 DDI2Q5TDH0 399 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF782Q6ZMW2 699 aaPredicted RBP12.4□□□□□ -0.42
LIMS3-201ENST00000437679 NANOGP1Q8N7R0 232 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 CHST4Q8NCG5 386 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 MYDGFQ969H8 173 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 PGLYRP3Q96LB9 341 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF714Q96N38 554 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 ZNRD1Q9P1U0 126 aa12.4□□□□□ -0.42
LIMS3-201ENST00000437679 MEX3AA1L020 520 aaKnown RBP12.39□□□□□ -0.43
LIMS3-201ENST00000437679 DEGS1O15121 323 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 CELP19835 753 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 LMO1P25800 156 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 ERP29P30040 261 aaKnown RBP12.39□□□□□ -0.43
LIMS3-201ENST00000437679 ZNF93P35789 620 aaPredicted RBP12.39□□□□□ -0.43
LIMS3-201ENST00000437679 LGALS4P56470 323 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 RIPK1Q13546 671 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 RSU1Q15404 277 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 KIAA2026Q5HYC2 2103 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 ELP2Q6IA86 826 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 TRAPPC6BQ86SZ2 158 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 TPRX1Q8N7U7 411 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 OR13D1Q8NGV5 346 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 DYRK2Q92630 601 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 NR1H4Q96RI1 486 aaPredicted RBP12.39□□□□□ -0.43
LIMS3-201ENST00000437679 MND1Q9BWT6 205 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 LINC00312Q9Y6C7 94 aa12.39□□□□□ -0.43
LIMS3-201ENST00000437679 A0A0G2JK05 382 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 GPR137BO60478 399 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 CD1AP06126 327 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 IGFBP3P17936 291 aaPredicted RBP12.38□□□□□ -0.43
LIMS3-201ENST00000437679 PTGFRP43088 359 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 OR3A4PP47883 348 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 HSPA13P48723 471 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 P2RX3P56373 397 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 RPL15P61313 204 aaKnown RBP12.38□□□□□ -0.43
LIMS3-201ENST00000437679 RPS11P62280 158 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIMS3-201ENST00000437679 RNLSQ5VYX0 342 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 Q6P435 159 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 GDPGP1Q6ZNW5 385 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 TCF23Q7RTU1 214 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 BEND2Q8NDZ0 799 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 OR4F5Q8NH21 305 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 OR5R1Q8NH85 324 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 ORAI1Q96D31 301 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 S100A13Q99584 98 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 METTL9Q9H1A3 318 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 PPA2Q9H2U2 334 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 ING4Q9UNL4 249 aa12.38□□□□□ -0.43
LIMS3-201ENST00000437679 UBE2J1Q9Y385 318 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms