RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 BCL3P20749 454 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 EPHA1P21709 976 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 CPT2P23786 658 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 UNC119Q13432 240 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 FAM76BQ5HYJ3 339 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 AVPI1Q5T686 147 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 OR10K2Q6IF99 312 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 CNIH2Q6PI25 160 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 BAIAP2L2Q6UXY1 529 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 C1QL2Q7Z5L3 287 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 BATF2Q8N1L9 274 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 OSR2Q8N2R0 312 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 POC1AQ8NBT0 407 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 LRRC29Q8WV35 223 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 S100ZQ8WXG8 99 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 PTX4Q96A99 478 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 DIRAS2Q96HU8 199 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 C1orf147Q96MC9 270 aaPredicted RBP10.15□□□□□ -0.78
PTPRF-208ENST00000437607 GAL3ST1Q99999 423 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 WDR12Q9GZL7 423 aaKnown RBP10.15□□□□□ -0.78
PTPRF-208ENST00000437607 MIXL1Q9H2W2 232 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 BANF2Q9H503 90 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 ZNF665Q9H7R5 613 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 RHOFQ9HBH0 211 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 HMG20AQ9NP66 347 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 ESM1Q9NQ30 184 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 RBFOX1Q9NWB1 397 aaKnown RBP10.15□□□□□ -0.78
PTPRF-208ENST00000437607 EXTL2Q9UBQ6 330 aa10.15□□□□□ -0.78
PTPRF-208ENST00000437607 A0A1W2PP11 408 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 LRRC30A6NM36 301 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 LDLRAD4O15165 306 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 RHBDL1O75783 438 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 PGA5P0DJD9 388 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 PRKACAP17612 351 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 ELK1P19419 428 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 EFNB2P52799 333 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 RBM11P57052 281 aaKnown RBP10.14□□□□□ -0.79
PTPRF-208ENST00000437607 FGF12P61328 243 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 RPS27AP62979 156 aaKnown RBP10.14□□□□□ -0.79
PTPRF-208ENST00000437607 QRFPP83859 136 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 MPPED2Q15777 294 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 SMIM21Q3B7S5 101 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 WDR82Q6UXN9 313 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 ASCL4Q6XD76 172 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 C1orf87Q8N0U7 546 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 C3orf56Q8N813 242 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 TMEM104Q8NE00 496 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 OR10Z1Q8NGY1 313 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 GCDHQ92947 438 aaPredicted RBP10.14□□□□□ -0.79
PTPRF-208ENST00000437607 MRPS24Q96EL2 167 aaKnown RBP10.14□□□□□ -0.79
PTPRF-208ENST00000437607 NRIP2Q9BQI9 281 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 SELENOIQ9C0D9 397 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 ATG5Q9H1Y0 275 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 ABCG5Q9H222 651 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 DIABLOQ9NR28 239 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 PPP1R3CQ9UQK1 317 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 NPTNQ9Y639 398 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 CACNG2Q9Y698 323 aa10.14□□□□□ -0.79
PTPRF-208ENST00000437607 A0A0A6YYH2 397 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 A6NJ64 397 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 TRIM77I1YAP6 450 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 IFNL4K9M1U5 179 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 AKR7A2O43488 359 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 SFTPBP07988 381 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 GLRA1P23415 457 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 GABRR1P24046 479 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 TNFSF8P32971 234 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 SNU13P55769 128 aaKnown RBP10.13□□□□□ -0.79
PTPRF-208ENST00000437607 GMFBP60983 142 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 PLA2G7Q13093 441 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 SCGB2A2Q13296 93 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 LSAMPQ13449 338 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 IL18Q14116 193 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 TMEM69Q5SWH9 247 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 ELP2Q6IA86 826 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 RAB12Q6IQ22 244 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 FAM131AQ6UXB0 335 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF826PQ6ZT77 177 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 LINC00596Q86U02 117 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 CCDC190Q86UF4 302 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 CMTM4Q8IZR5 234 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 FAM58AQ8N1B3 248 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 ZDHHC22Q8N966 263 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 OR4M1Q8NGD0 313 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 OR56B1Q8NGI3 324 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 OR51T1Q8NGJ9 327 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 SGMS2Q8NHU3 365 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 Q8TCH9 128 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 S100A16Q96FQ6 103 aaKnown RBP10.13□□□□□ -0.79
PTPRF-208ENST00000437607 Q96M66 194 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF488Q96MN9 340 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 SLC6A7Q99884 636 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 AKIP1Q9NQ31 210 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 MTCH1Q9NZJ7 389 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 RNF7Q9UBF6 113 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 DNAJB11Q9UBS4 358 aa10.13□□□□□ -0.79
PTPRF-208ENST00000437607 IGHV1-69-2A0A0G2JMI3 117 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 SRRM5B3KS81 715 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 CLDN25C9JDP6 229 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 FSHBP01225 129 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms