RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ST3GAL6Q9Y274 331 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 POLR3KQ9Y2Y1 108 aaPredicted RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 FRS3O43559 492 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 TNFSF13O75888 250 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 PTHLHP12272 177 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 ID4P47928 161 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 RSPO4Q2I0M5 234 aaPredicted RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 RPL7L1Q6DKI1 246 aaKnown RBP8.64□□□□□ -1.03
USP54-205ENST00000424265 KCNIP4Q6PIL6 250 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 C10orf111Q8N326 155 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 TCTEX1D1Q8N7M0 179 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 SLC38A9Q8NBW4 561 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 DNAJA3Q96EY1 480 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 C4orf36Q96KX1 117 aa8.64□□□□□ -1.03
USP54-205ENST00000424265 CABIN1Q9Y6J0 2220 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 H3BML4 177 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TRAPPC2LH3BP13 241 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 GZMHP20718 246 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 BAXQ07812 192 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 AADACL3Q5VUY0 350 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TMEM144Q7Z5S9 345 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 SYT9Q86SS6 491 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 SUMF1Q8NBK3 374 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 NECAP1Q8NC96 275 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 MFRPQ9BY79 579 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 INPP5EQ9NRR6 644 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ABCA7Q8IZY2 2146 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 A0A087WWC5 75 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TRBV2A0A0J9YWF9 115 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 FAM230AA0A1W2PPH8 454 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 H0Y8G0 127 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ZNF207O43670 478 aaKnown RBP8.63□□□□□ -1.03
USP54-205ENST00000424265 LTBQ06643 244 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 C1orf140Q5VVS0 124 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ZNF721Q8TF20 911 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 GHSRQ92847 366 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TMEM121BQ9BXQ6 578 aaPredicted RBP8.63□□□□□ -1.03
USP54-205ENST00000424265 OR52D1Q9H346 318 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 G6PC2Q9NQR9 355 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 FAM221AA4D161 298 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 C11orf98E9PRG8 122 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 M0QYG6 137 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 HAND1O96004 215 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 IGHG1P01857 330 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 PAX1P15863 534 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ARR3P36575 388 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 GLIPR1P48060 266 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 CX3CR1P49238 355 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ODF1Q14990 250 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 OR1C1Q15619 314 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TP53I3Q53FA7 332 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 EMC4Q5J8M3 183 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 SLC25A26Q70HW3 274 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 ISG20L2Q9H9L3 353 aaKnown RBP8.63□□□□□ -1.03
USP54-205ENST00000424265 CLN8Q9UBY8 286 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 IGHV1-45A0A0A0MS14 117 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 TRAV1-2A0A0B4J238 106 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 E5RGE8 158 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 NBEAP1P0C6P0 100 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 SFTPDP35247 375 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 PGGHGQ32M88 737 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 OR10C1Q96KK4 312 aa8.63□□□□□ -1.03
USP54-205ENST00000424265 CD3DP04234 171 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 CT62P0C5K7 136 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 ELLP55199 621 aaPredicted RBP8.62□□□□□ -1.03
USP54-205ENST00000424265 HLA-DRB3P79483 266 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 SPATA45Q537H7 98 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 BTNL8Q6UX41 500 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 C5orf24Q7Z6I8 188 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 LINC01551Q86U37 167 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 ALG12Q9BV10 488 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 EMC9Q9Y3B6 208 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 ETV7Q9Y603 341 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 PLPP2O43688 288 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 FCGR3AP08637 254 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 PSG1P11464 419 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 MMP16P51512 607 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 KRTDAPP60985 99 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 DOC2BQ14184 412 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 GNMTQ14749 295 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 TMEM176BQ3YBM2 270 aaPredicted RBP8.62□□□□□ -1.03
USP54-205ENST00000424265 ANKRD16Q6P6B7 361 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 DPY19L4Q7Z388 723 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 CMTM2Q8TAZ6 248 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 SAMD8Q96LT4 415 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 TMEM56Q96MV1 263 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 SYT3Q9BQG1 590 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 EGLN3Q9H6Z9 239 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 TMEM56-RWDD3S4R434 201 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 KIF26AQ9ULI4 1882 aaPredicted RBP8.62□□□□□ -1.03
USP54-205ENST00000424265 TNFSF12O43508 249 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 LIPFP07098 398 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 SIGMAR1Q99720 223 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 CHST6Q9GZX3 395 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 A0A0U1RQK1 487 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 F8VVB4 439 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 F8VWA3 439 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 CDS2O95674 445 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 FBXO45P0C2W1 286 aa8.62□□□□□ -1.03
USP54-205ENST00000424265 HTR1FP30939 366 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms