RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TRAV1-1A0A0B4J248 108 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 FAM221AA4D161 298 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 GCGP01275 180 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 FAHP16930 419 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 NKX2-1P43699 371 aaPredicted RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 DYNLT3P51808 116 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 CLRN1P58418 232 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 RAB11AP62491 216 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TMEM31Q5JXX7 168 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 CYB5R2Q6BCY4 276 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ZNF880Q6PDB4 577 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 DPPA3Q6W0C5 159 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 CMTM1Q8IZ96 169 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 OR13H1Q8NG92 308 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 OR10A7Q8NGE5 316 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ST8SIA1Q92185 356 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 PIGTQ969N2 578 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 NKX2-4Q9H2Z4 354 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SDF2L1Q9HCN8 221 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ALKBH4Q9NXW9 302 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 V9GYS6 101 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ETV2O00321 342 aaPredicted RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 CTSEP14091 401 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 UCP3P55916 312 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 COL10A1Q03692 680 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SMAD4Q13485 552 aaKnown RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 RAB35Q15286 201 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SLC25A47Q6Q0C1 308 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SUMF1Q8NBK3 374 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 MOB3AQ96BX8 217 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SRD5A3Q9H8P0 318 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SHANK1Q9Y566 2161 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 C2orf72A6NCS6 295 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ANKUB1A6NFN9 424 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 SSSCA1O60232 199 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 DHRS3O75911 302 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 DFFBO76075 338 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TMEM50AO95807 157 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 HOXB2P14652 356 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TNFRSF4P43489 277 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 GRB2P62993 217 aaKnown RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 MEX3BQ6ZN04 569 aaKnown RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 ZNF100Q8IYN0 542 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TMEM123Q8N131 208 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 PP6455Q8WZ26 134 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ADGRG7Q96K78 797 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 TMEM106CQ9BVX2 250 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 CISD1Q9NZ45 108 aaKnown RBP9.29□□□□□ -0.92
USP54-204ENST00000422491 GNG13Q9P2W3 67 aa9.29□□□□□ -0.92
USP54-204ENST00000422491 ZNF705GA8MUZ8 300 aaPredicted RBP9.28□□□□□ -0.92
USP54-204ENST00000422491 TRDCB7Z8K6 153 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 H3BML4 177 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CST7O76096 145 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 IGHG1P01857 330 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CTSSP25774 331 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 G0S2P27469 103 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 KCNMB1Q16558 191 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 SLC25A26Q70HW3 274 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 YAF2Q8IY57 180 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 MAML2Q8IZL2 1156 aaPredicted RBP9.28□□□□□ -0.92
USP54-204ENST00000422491 DDIT4LQ96D03 193 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 PGAM5Q96HS1 289 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 PYGO2Q9BRQ0 406 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 VDAC3Q9Y277 283 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 SHISA7A6NL88 538 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 TK1P04183 234 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 BCL2P10415 239 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 PDLIM4P50479 330 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 C1orf61Q13536 156 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CXorf66Q5JRM2 361 aaPredicted RBP9.28□□□□□ -0.92
USP54-204ENST00000422491 C17orf78Q8N4C9 275 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CCDC71LQ8N9Z2 235 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 DYRK2Q92630 601 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 TPSD1Q9BZJ3 242 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CTDSP1Q9GZU7 261 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 MAGT1Q9H0U3 335 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 CHD9Q3L8U1 2897 aa9.28□□□□□ -0.92
USP54-204ENST00000422491 A0A0U1RQV5 110 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 C3orf85A0A1B0GTC6 90 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 SHISA8B8ZZ34 492 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 TRAF3IP2O43734 574 aaPredicted RBP9.27□□□□□ -0.93
USP54-204ENST00000422491 EFNA2O43921 213 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 CD55P08174 381 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 FOSL2P15408 326 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 TAS2R30P59541 319 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 BAXQ07812 192 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 NKAIN1Q4KMZ8 207 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 Q6ZSR3 168 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 UEVLDQ8IX04 471 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 TMEM217Q8N7C4 229 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 OR1N1Q8NGS0 311 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 ABHD14BQ96IU4 210 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 HIST1H2AAQ96QV6 131 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 TMEM222Q9H0R3 208 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 FBRSQ9HAH7 460 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 VAX2Q9UIW0 290 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 XKRY2A2RUG3 117 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 MPPED1O15442 326 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms