RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CBX5P45973 191 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 TLE4Q04727 773 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 SSBP1Q04837 148 aaKnown RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 RBM39Q14498 530 aaKnown RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 RGS21Q2M5E4 152 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 DTX2Q86UW9 622 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 POC5Q8NA72 575 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 SETD6Q8TBK2 473 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 GPX8Q8TED1 209 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 TRIM63Q969Q1 353 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CMSS1Q9BQ75 279 aaKnown RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 TRAF4Q9BUZ4 470 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CACNG6Q9BXT2 260 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 WDR13Q9H1Z4 485 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CLEC4MQ9H2X3 399 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 NOTCH2Q04721 2471 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 IGHV1-69-2A0A0G2JMI3 117 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 UBE2QL1A1L167 161 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CLEC18AA5D8T8 446 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 H7C417 338 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 SIRPB1O00241 398 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 HSPB6O14558 160 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CA11O75493 328 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CLDN1O95832 211 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 SOD3P08294 240 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 MELTFP08582 738 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 EGR1P18146 543 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CD80P33681 288 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 RCVRNP35243 200 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 ZNF146Q15072 292 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 MICBQ29980 383 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 PAN3Q58A45 887 aaKnown RBP14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 SP5Q6BEB4 398 aaPredicted RBP14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 SIGIRRQ6IA17 410 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 MZT2BQ6NZ67 158 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CLEC18BQ6UXF7 455 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 C20orf204Q6ZNR8 217 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 GCSAMQ8N6F7 178 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CLEC18CQ8NCF0 446 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 ST8SIA4Q92187 359 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CCL17Q92583 94 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 SEH1LQ96EE3 360 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 FAAP24Q9BTP7 215 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 CHMP1AQ9HD42 196 aaPredicted RBP14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 NLKQ9UBE8 527 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 MTFP1Q9UDX5 166 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 PLEKHA6Q9Y2H5 1048 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 WIPI2Q9Y4P8 454 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 TANC2Q9HCD6 1990 aa14.42□□□□□ -0.1
CCDC28B-202ENST00000421922 OR2H2O95918 312 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 DANCRP0C864 163 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 FAUP35544 74 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 PMELP40967 661 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 IFITM3Q01628 133 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 HFEQ30201 348 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 OLFML2AQ68BL7 652 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 C11orf71Q6IPW1 123 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 SUMF2Q8NBJ7 301 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 NEU4Q8WWR8 484 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 RDH5Q92781 318 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 SULT4A1Q9BR01 284 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 DPCDQ9BVM2 203 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 IFT22Q9H7X7 185 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 ZNF701Q9NV72 531 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 RCC2Q9P258 522 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 KLK11Q9UBX7 282 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 AK3Q9UIJ7 227 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 ELF5Q9UKW6 265 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 MYO9AB2RTY4 2548 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 IGHV3OR15-7A0A075B7D8 119 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 A0A1W2PPR1 153 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 C3orf80F5H4A9 247 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 LANCL1O43813 399 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 ORC5O43913 435 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 GLAP06280 429 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 GABRA2P47869 451 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 BRICD5Q6PL45 260 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 RTN4RL2Q86UN3 420 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 C7orf50Q9BRJ6 194 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 TMEM106BQ9NUM4 274 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 ETAA1Q9NY74 926 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 ZNF581Q9P0T4 197 aa14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 RBMX2Q9Y388 322 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-202ENST00000421922 TRAV38-1A0A0B4J264 116 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 OOEPA6NGQ2 149 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 NKX6-3A6NJ46 265 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 RFPL4AA6NLU0 287 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 OR2AT4A6NND4 320 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 RFPL4AL1F8VTS6 287 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 CD8AP01732 235 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 HPXP02790 462 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 FCER2P06734 321 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 MDH2P40926 338 aaKnown RBP14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 TAS2R19P59542 299 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 ASAH1Q13510 395 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 SFRP4Q6FHJ7 346 aaPredicted RBP14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 Q6P435 159 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 DCDC5Q6ZRR9 648 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 ASCC1Q8N9N2 400 aaKnown RBP14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 PPP1R35Q8TAP8 253 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms