RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SPEM1Q8N4L4 309 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 SLC16A11Q8NCK7 471 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 SLC26A10Q8NG04 563 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 ORAOV1Q8WV07 137 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 TMEM239Q8WW34 195 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 TMEM106AQ96A25 262 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 TMEM159Q96B96 161 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 FAM3DQ96BQ1 224 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 TECTBQ96PL2 329 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 SLC22A12Q96S37 553 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 LYSMD1Q96S90 227 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 SERINC2Q96SA4 455 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 PDCD1LG2Q9BQ51 273 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 C20orf144Q9BQM9 153 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 MIEN1Q9BRT3 115 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 HCAR1Q9BXC0 346 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 CST11Q9H112 138 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 ARV1Q9H2C2 271 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 SRD5A3Q9H8P0 318 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 CKLFQ9UBR5 152 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 ZNF223Q9UK11 482 aaPredicted RBP4.74□□□□□ -1.65
CLK1-202ENST00000409403 VSIG4Q9Y279 399 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 MED31Q9Y3C7 131 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 PTPRDP23468 1912 aa4.74□□□□□ -1.65
CLK1-202ENST00000409403 TRAV39A0A0B4J263 110 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 A0A0D9SEW6 157 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 TRBV11-1A0A0K0K1C0 115 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 RRP8O43159 456 aaKnown RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 NXPH2O95156 264 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SFT2D2O95562 160 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 EPPINO95925 133 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SCGB1D1O95968 90 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NUDT3O95989 172 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CYB5R3P00387 301 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 HBE1P02100 147 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ERCC1P07992 297 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 SLC35G6P0C7Q6 338 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 OR13C7P0DN81 318 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 PTHLHP12272 177 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 HOXC8P31273 242 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CD52P31358 61 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 PDLIM4P50479 330 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 BLKP51451 505 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CEBPGP53567 150 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 HIST1H3AP68431 136 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 TRIP6Q15654 476 aaKnown RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 TAF9Q16594 264 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ATP6V1FQ16864 119 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 TMEM183BQ1AE95 376 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 GPR157Q5UAW9 335 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NCR3LG1Q68D85 454 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ETFRF1Q6IPR1 90 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SLC25A24Q6NUK1 477 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 LEG1Q6P5S2 330 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CFAP161Q6P656 301 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 DEGS2Q6QHC5 323 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CLEC2AQ6UVW9 174 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 C5orf24Q7Z6I8 188 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ZNF595Q8IYB9 648 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 FAM185AQ8N0U4 392 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 TMEM104Q8NE00 496 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 OR52E1Q8NGJ3 308 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 WFIKKN2Q8TEU8 576 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 C2orf15Q8WU43 125 aaKnown RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 TMEM255BQ8WV15 326 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 KCNE4Q8WWG9 221 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 RGP1Q92546 391 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 FRZBQ92765 325 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 RBMXL1Q96E39 390 aaKnown RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 SLC6A7Q99884 636 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 WFDC6Q9BQY6 131 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NUDT16L1Q9BRJ7 211 aaKnown RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 GINS3Q9BRX5 216 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 PIMREGQ9BSJ6 248 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 PLK3Q9H4B4 646 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 KIR3DX1Q9H7L2 352 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 DNAJC4Q9NNZ3 241 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ADAP2Q9NPF8 381 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CBLN4Q9NTU7 201 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 LYRM2Q9NU23 88 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 KIAA1456Q9P272 454 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 LHX3Q9UBR4 397 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SLC7A7Q9UM01 511 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ZNF443Q9Y2A4 671 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 YIPF1Q9Y548 306 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NBASA2RRP1 2371 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 ATRQ13535 2644 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 C17orf102A2RUQ5 167 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 RBFOX3A6NFN3 312 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NPIPB15A6NHN6 443 aaPredicted RBP4.73□□□□□ -1.65
CLK1-202ENST00000409403 NKX6-3A6NJ46 265 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NPIPA2E9PIF3 369 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 PRAMEF26H0Y7S4 382 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 K7ERQ8 282 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CDC42EP2O14613 210 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SOX15O60248 233 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NME2P1O60361 137 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 NEURL1O76050 574 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 SLPIP03973 132 aa4.73□□□□□ -1.65
CLK1-202ENST00000409403 CXCL1P09341 107 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms