RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MCHR2Q969V1 340 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 RBM14Q96PK6 669 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 WDR54Q9H977 334 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 WSB2Q9NYS7 404 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MYH13Q9UKX3 1938 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 M0R2Z0 102 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 KLF7O75840 302 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 B4GALT1P15291 398 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PNLIPP16233 465 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 AVPR2P30518 371 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 UBE2L3P68036 154 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 FNDC7Q5VTL7 733 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 WDFY1Q8IWB7 410 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 LILRA3Q8N6C8 439 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 GCSAMQ8N6F7 178 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 OR52B4Q8NGK2 314 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MYOZ3Q8TDC0 251 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 GNRHR2Q96P88 292 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 TSPAN32Q96QS1 320 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 CLN8Q9UBY8 286 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 PCOLCE2Q9UKZ9 415 aa5.41□□□□□ -1.54
SCN1A-203ENST00000409050 MYH9P35579 1960 aaKnown RBP5.41□□□□□ -1.54
SCN1A-203ENST00000409050 LAMB1P07942 1786 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF253O75346 499 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 HLA-DQA1P01909 254 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 SNRPEP62304 92 aaKnown RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 KLF9Q13886 244 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 AGERQ15109 404 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 PAPPA-AS1Q5QFB9 102 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 AMMECR1LQ6DCA0 310 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 VWA1Q6PCB0 445 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 Q6ZN92 141 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 MOB3BQ86TA1 216 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 C9orf62Q8N4C0 152 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM251Q8N6I4 163 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 STPG3Q8N7X2 389 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 OR2D3Q8NGH3 330 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 BLNKQ8WV28 456 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM37Q8WXS4 190 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 PACRGQ96M98 296 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 HES7Q9BYE0 225 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 IL19Q9UHD0 177 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 TRBV5-3A0A0A0MS03 114 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 A0A0U1RQV5 110 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 A8MWL6 223 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 C11orf94C9JXX5 98 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 NEURL1O76050 574 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 CST7O76096 145 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ETHE1O95571 254 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 GHRHP01286 108 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 TSPAN7P41732 249 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 LGALS7P47929 136 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 LBX1P52954 281 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 NKAIN2Q5VXU1 208 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ASTLQ6HA08 431 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 WDR74Q6RFH5 385 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ANKRD37Q7Z713 158 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 SAXO1Q8IYX7 474 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 BHLHE23Q8NDY6 225 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 OR1L8Q8NGR8 309 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 RNF133Q8WVZ7 376 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ZDHHC16Q969W1 377 aa5.4□□□□□ -1.54
SCN1A-203ENST00000409050 ELF5Q9UKW6 265 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-203ENST00000409050 TRAV9-1A0A075B6T8 112 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 A0A087X0M5 115 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1B0GX30 115 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ZC3H12DA2A288 527 aaKnown RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 FBLL1A6NHQ2 334 aaKnown RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 KIAA1324LA8MWY0 1029 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 RPL36A-HNRNPH2H7BZ11 118 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 K7ESF4 209 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 CYB5R3P00387 301 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 RPL29P47914 159 aaKnown RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 LIMK1P53667 647 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 LSM11P83369 360 aaKnown RBP eCLIP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF816Q0VGE8 651 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 OR1C1Q15619 314 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 AWAT1Q58HT5 328 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 PDZD11Q5EBL8 140 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM240Q5SV17 173 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 MRGPREQ86SM8 312 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ATG4DQ86TL0 474 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 MSRB3Q8IXL7 192 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 DTD1Q8TEA8 209 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 R3HDM4Q96D70 268 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 NRSN2Q9GZP1 204 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF552Q9H707 407 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 OR5AC2Q9NZP5 309 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 OR2W1Q9Y3N9 320 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 OR4A8P0C604 315 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 EPHA8P29322 1005 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 MC5RP33032 325 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 DLX1P56177 255 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 MRPS11P82912 194 aaKnown RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF260Q3ZCT1 412 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 DGAT2L7PQ6IED9 249 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 PRR27Q6MZM9 219 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 PCNPQ8WW12 178 aaKnown RBP5.4□□□□□ -1.55
SCN1A-203ENST00000409050 CHST5Q9GZS9 411 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 V9GYH0 126 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms