RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZSCAN4Q8NAM6 433 aaPredicted RBP10.52□□□□□ -0.73
HMGB1-206ENST00000405805 FLVCR1-AS1Q8TAF5 88 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 RTN4IP1Q8WWV3 396 aaPredicted RBP10.52□□□□□ -0.73
HMGB1-206ENST00000405805 SPTSSAQ969W0 71 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ASCL3Q9NQ33 180 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 SELENOKQ9Y6D0 94 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 CLDN34H7C241 214 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 BPNT1O95861 308 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 PGA3P0DJD8 388 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 FHL1Q13642 323 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 YRDCQ86U90 279 aaKnown RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 RNF222A6NCQ9 220 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 GABRA4P48169 554 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 THEM4Q5T1C6 240 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 DHRS11Q6UWP2 260 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 OR51H1Q8NH63 302 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 MRPL37Q9BZE1 423 aaKnown RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 ARL2-SNX15V9GYD0 113 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 BLACEA4D250 179 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 M0R135 149 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 BCAT2O15382 392 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 CDC14BO60729 498 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 DDAH2O95865 285 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 IGHEP01854 428 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 CHRNB4P30926 498 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 GABRA2P47869 451 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 HIST1H3AP68431 136 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 GFI1BQ5VTD9 330 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 TDHQ8IZJ6 230 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 MRPL24Q96A35 216 aaKnown RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF799Q96GE5 643 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 ALKBH3Q96Q83 286 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 SMIM7Q9BQ49 75 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 FSCN3Q9NQT6 498 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 RALGAPA1Q6GYQ0 2036 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 IGLV1-36A0A0B4J1U3 117 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 C5orf52A6NGY3 159 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 MARCH11A6NNE9 402 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 TRAF3IP2O43734 574 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-206ENST00000405805 HPNP05981 417 aa10.51□□□□□ -0.73
HMGB1-206ENST00000405805 FANCMQ8IYD8 2048 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 A6NCN8 305 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 CDRT15L2A8MXV6 281 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 NPIPB9F8W1W9 429 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 SFT2D2O95562 160 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 RAB7AP51149 207 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF260Q3ZCT1 412 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 WDR74Q6RFH5 385 aaPredicted RBP10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ZDHHC22Q8N966 263 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 SMRP1Q8NCR6 262 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 OR13D1Q8NGV5 346 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ATP5SQ99766 215 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 VCANP13611 3396 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 CHD9Q3L8U1 2897 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 TGIF2-C20orf24A0A0A6YYL0 155 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 C9J4A7 227 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 APOBEC1P41238 236 aaKnown RBP10.5□□□□□ -0.73
HMGB1-206ENST00000405805 DLK1P80370 383 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ISXQ2M1V0 245 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 PHYHD1Q5SRE7 291 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 BIVMQ86UB2 503 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 NDUFAF3Q9BU61 184 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 SLC17A5Q9NRA2 495 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 RCC2Q9P258 522 aaKnown RBP10.5□□□□□ -0.73
HMGB1-206ENST00000405805 FUT9Q9Y231 359 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 R4GN57 208 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 CCDC187A0A096LP49 1063 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 A0A1W2PR80 420 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 HSD17B6O14756 317 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 TRGC1P0CF51 173 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 CCR5P51681 352 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 MALLQ13021 153 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ATP6V1FQ16864 119 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 ANKRD55Q3KP44 614 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 LINC00114Q6XXX2 140 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 CYYR1Q96J86 154 aa10.5□□□□□ -0.73
HMGB1-206ENST00000405805 DHRS7CA6NNS2 312 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 MFNGO00587 321 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 UBE2CO00762 179 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 DLEU1O43261 78 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 HLA-HP01893 362 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 CD79AP11912 226 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 B4GALT1P15291 398 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 LTBRP36941 435 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 ELLP55199 621 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 UNC119Q13432 240 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 OPN5Q6U736 354 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 DOK3Q7L591 496 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 FBXL14Q8N1E6 418 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 SLC38A9Q8NBW4 561 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 LFNGQ8NES3 379 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 SHDQ96IW2 340 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 PRRX2Q99811 253 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 C19orf25Q9UFG5 118 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 RIF1Q5UIP0 2472 aaKnown RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 SSSCA1O60232 199 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 IGHV2-70P01814 119 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 RPS16P62249 146 aaKnown RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 SSBP1Q04837 148 aaKnown RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 OR4A47Q6IF82 309 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms