RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF383Q8NA42 475 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 LOC400499M0QZD8 3231 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 SCRG1O75711 98 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 CHATP28329 748 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 UCP2P55851 309 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 BOD1Q96IK1 185 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 YPEL4Q96NS1 127 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 GPR61Q9BZJ8 451 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 TOLLIPQ9H0E2 274 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 CRIM1Q9NZV1 1036 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 POMT1Q9Y6A1 747 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 ZNF587BE7ETH6 402 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 PROB1E7EW31 1015 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 OR7C1O76099 320 aaPredicted RBP18.15■□□□□ 0.5
CTCF-202ENST00000401394 HTR5AP47898 357 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 OR5C1Q8NGR4 320 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 MUCL1Q96DR8 90 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 METTL9Q9H1A3 318 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 LMO1P25800 156 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 NXPH1P58417 271 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 DAZAP2Q15038 168 aaPredicted RBP18.14■□□□□ 0.49
CTCF-202ENST00000401394 PPA1Q15181 289 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 TMEM123Q8N131 208 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 OR10D4PQ8NGN7 298 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 R4GN57 208 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 RBFOX3A6NFN3 312 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 DHHO43323 396 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 TRGC2P03986 189 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 CCL3P10147 92 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 ALDH3B1P43353 468 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 DLK1P80370 383 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 ZNF154Q13106 437 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 PFDN5Q99471 154 aa18.14■□□□□ 0.49
CTCF-202ENST00000401394 CXorf65A6NEN9 183 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 F10P00742 488 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 S100PP25815 95 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 RHBDD2Q6NTF9 364 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 LURAP1LQ8IV03 231 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 OR2C3Q8N628 320 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 PIGCQ92535 297 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 SRXN1Q9BYN0 137 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 DEFB126Q9BYW3 111 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 ULBP2Q9BZM5 246 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 DECR2Q9NUI1 292 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 CHCHD2Q9Y6H1 151 aaPredicted RBP18.13■□□□□ 0.49
CTCF-202ENST00000401394 COL5A1P20908 1838 aaPredicted RBP18.13■□□□□ 0.49
CTCF-202ENST00000401394 SOD3P08294 240 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 CCL2P13500 99 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 SUMO3P55854 103 aaPredicted RBP18.13■□□□□ 0.49
CTCF-202ENST00000401394 ZIC4Q8N9L1 334 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 ZNF442Q9H7R0 627 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 MTCH2Q9Y6C9 303 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 KIAA2026Q5HYC2 2103 aa18.13■□□□□ 0.49
CTCF-202ENST00000401394 NPIPA2E9PIF3 369 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 NPIPA3F8WFD2 350 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 HSD17B6O14756 317 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 RRP8O43159 456 aaKnown RBP18.12■□□□□ 0.49
CTCF-202ENST00000401394 ADAM20O43506 726 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 DYNLT3P51808 116 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 C9orf135Q5VTT2 229 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 PP6455Q8WZ26 134 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 SPACA9Q96E40 222 aaPredicted RBP18.12■□□□□ 0.49
CTCF-202ENST00000401394 CRLF2Q9HC73 371 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 SLC7A10Q9NS82 523 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 CYB5BO43169 146 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 UBE2KP61086 200 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 ELOBQ15370 118 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 ZNF600Q6ZNG1 722 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 CHRNA10Q9GZZ6 450 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 PRO1933Q9H354 126 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 IGKV1D-13A0A0B4J2D9 117 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 TERTO14746 1132 aaKnown RBP18.12■□□□□ 0.49
CTCF-202ENST00000401394 IGKV1-13P0DP09 117 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 GNRHRP30968 328 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 ZNF92Q03936 586 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 KCNMB1Q16558 191 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 GUSBP11Q6P575 273 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 SYT13Q7L8C5 426 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 OR4D5Q8NGN0 318 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 BORCS8Q96FH0 119 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 TUBA4BQ9H853 241 aa18.12■□□□□ 0.49
CTCF-202ENST00000401394 A0A0U1RQV5 110 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 ZFAND5O76080 213 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 SCTP09683 121 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 SHBQ15464 509 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 HMGN3Q15651 99 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 TSC22D1Q15714 1073 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 SSX3Q99909 188 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 DSPP15924 2871 aaKnown RBP18.11■□□□□ 0.49
CTCF-202ENST00000401394 ETV2O00321 342 aaPredicted RBP18.11■□□□□ 0.49
CTCF-202ENST00000401394 HLA-HP01893 362 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 SLC25A53Q5H9E4 307 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 SMRP1Q8NCR6 262 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 UBALD1Q8TB05 177 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 GALNT14Q96FL9 552 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 TMPRSS5Q9H3S3 457 aa18.11■□□□□ 0.49
CTCF-202ENST00000401394 A0A0J9YW62 118 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 C3orf85A0A1B0GTC6 90 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 A0A1W2PR80 420 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BKO60814 126 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms