RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 DEDDO75618 318 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 SUPT4H1P63272 117 aaKnown RBP14.08□□□□□ -0.16
PCDH1-203ENST00000394536 RUNX1Q01196 453 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 SPANXN5Q5MJ07 72 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 IL22RA1Q8N6P7 574 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 C12orf49Q9H741 205 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 SIT1Q9Y3P8 196 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 PPP1R2P9O14990 202 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 HLA-GP17693 338 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 PPP1CCP36873 323 aaKnown RBP14.08□□□□□ -0.16
PCDH1-203ENST00000394536 SRPXP78539 464 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 LTC4SQ16873 150 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 DHRS7BQ6IAN0 325 aaPredicted RBP14.08□□□□□ -0.16
PCDH1-203ENST00000394536 C15orf54Q8N8G6 183 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 POC1BQ8TC44 478 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 RAB5AP20339 215 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 FUT6P51993 359 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 NECAP1Q8NC96 275 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 NINJ1Q92982 152 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 OSGIN2Q9Y236 505 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 WSB1Q9Y6I7 421 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 ZNF705GA8MUZ8 300 aaPredicted RBP14.07□□□□□ -0.16
PCDH1-203ENST00000394536 ZNF732B4DXR9 585 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 EXT1Q16394 746 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 SPATA46Q5T0L3 261 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 MRPL13Q9BYD1 178 aaKnown RBP14.07□□□□□ -0.16
PCDH1-203ENST00000394536 A0A0U1RQK1 487 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 ZNF816-ZNF321PA0A0X1KG74 233 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 WIPF3A6NGB9 483 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 CLDN1O95832 211 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 FCGR3AP08637 254 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 ADIRFQ15847 76 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 HLA-BQ31612 363 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 DNM1P46Q6ZS02 220 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 SDSLQ96GA7 329 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 TMED3Q9Y3Q3 217 aa14.07□□□□□ -0.16
PCDH1-203ENST00000394536 PPYP01298 95 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 CYB561P49447 251 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 RAB35Q15286 201 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 WDR74Q6RFH5 385 aaPredicted RBP14.06□□□□□ -0.16
PCDH1-203ENST00000394536 ZNF429Q86V71 674 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 ADPRHL1Q8NDY3 354 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 CYTL1Q9NRR1 136 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 B4GALT7Q9UBV7 327 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 PRF1P14222 555 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 DEFA6Q01524 100 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 OR10J5Q8NHC4 309 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 OR5B12Q96R08 314 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 RARRES2Q99969 163 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 SLC7A10Q9NS82 523 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 POLEQ07864 2286 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 A0A1W2PR80 420 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 CSRP1P21291 193 aaKnown RBP14.06□□□□□ -0.16
PCDH1-203ENST00000394536 APLNRP35414 380 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 TMEM267Q0VDI3 215 aaPredicted RBP14.06□□□□□ -0.16
PCDH1-203ENST00000394536 UBE2ZQ9H832 354 aaPredicted RBP14.06□□□□□ -0.16
PCDH1-203ENST00000394536 PLEKHF2Q9H8W4 249 aa14.06□□□□□ -0.16
PCDH1-203ENST00000394536 KIF26AQ9ULI4 1882 aaPredicted RBP14.06□□□□□ -0.16
PCDH1-203ENST00000394536 IGHV5-10-1A0A0J9YXX1 117 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 FGF16O43320 207 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 YIF1AO95070 293 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 ATP6V0CP27449 155 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 EWSR1Q01844 656 aaKnown RBP eCLIP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 TBC1D26Q86UD7 250 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 SPEM1Q8N4L4 309 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 OR10AD1Q8NGE0 317 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 ABHD3Q8WU67 409 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 SLC39A9Q9NUM3 307 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 RIF1Q5UIP0 2472 aaKnown RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 MPPED1O15442 326 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 CHST1O43916 411 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 ACKR3P25106 362 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 DUSP3P51452 185 aaPredicted RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 RAC1P63000 192 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 CXorf66Q5JRM2 361 aaPredicted RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 C9orf152Q5JTZ5 239 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 GAPTQ8N292 157 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 OR10D3Q8NH80 312 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 ERRFI1Q9UJM3 462 aaPredicted RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 RNF150Q9ULK6 438 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 CARHSP1Q9Y2V2 147 aaKnown RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 DNAH14Q0VDD8 3507 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 OR6C6A6NF89 314 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 HBE1P02100 147 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 FGF8P55075 233 aaPredicted RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 S100A12P80511 92 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 ZNF154Q13106 437 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 RNF212Q495C1 297 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 RHBDD1Q8TEB9 315 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 HIST1H2BAQ96A08 127 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 BSCL2Q96G97 398 aaPredicted RBP14.05□□□□□ -0.16
PCDH1-203ENST00000394536 TGIF2Q9GZN2 237 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 TOLLIPQ9H0E2 274 aa14.05□□□□□ -0.16
PCDH1-203ENST00000394536 KIR2DS1A0A191URI9 304 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 RBFOX3A6NFN3 312 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 F8VVB4 439 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 F8VWA3 439 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 IFNA1P01562 189 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 KIR2DS4P43632 304 aa14.04□□□□□ -0.16
PCDH1-203ENST00000394536 DYNLT3P51808 116 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms