RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 VASH2Q86V25 355 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 TMEM156Q8N614 296 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 ZNF441Q8N8Z8 693 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 FNDC9Q8TBE3 224 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 RCC1LQ96I51 464 aaKnown RBP9.72□□□□□ -0.85
CUX1-204ENST00000393824 IMMP1LQ96LU5 166 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 HIST1H2BLQ99880 126 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 WFDC1Q9HC57 220 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 B3GALT5Q9Y2C3 310 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 NSG2Q9Y328 171 aa9.72□□□□□ -0.85
CUX1-204ENST00000393824 SMG1Q96Q15 3661 aaKnown RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 TGIF2-C20orf24A0A0A6YYL0 155 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 TRBV11-1A0A0K0K1C0 115 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 TMEM269A0A1B0GVZ9 245 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 K7N7A8 449 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 HSD17B6O14756 317 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 CYB5BO43169 146 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 SLC16A7O60669 478 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 C1QL1O75973 258 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 DXOO77932 396 aaKnown RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 PPP1CCP36873 323 aaKnown RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 RBMXP38159 391 aaKnown RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 FOLR3P41439 243 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 UBE2KP61086 200 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 HNF4GQ14541 408 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 FAM189A2Q15884 450 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 ACKR1Q16570 336 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 PLAC9Q5JTB6 97 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 GPR157Q5UAW9 335 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 C1QL3Q5VWW1 255 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 CBLN3Q6UW01 205 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 C5orf24Q7Z6I8 188 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 GATSQ8NAP1 163 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 OR8G5Q8NG78 346 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 FRZBQ92765 325 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 ZNF524Q96C55 264 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 RARRES2Q99969 163 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 NICN1Q9BSH3 213 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 ACTR3CQ9C0K3 210 aaPredicted RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 SLC25A31Q9H0C2 315 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 ZNF160Q9HCG1 818 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 NXT1Q9UKK6 140 aaKnown RBP9.71□□□□□ -0.85
CUX1-204ENST00000393824 ALPK2Q86TB3 2170 aa9.71□□□□□ -0.85
CUX1-204ENST00000393824 A0A0A6YYD4 124 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 RBFOX3A6NFN3 312 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 DLEU1O43261 78 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 SNRPCP09234 159 aaKnown RBP9.71□□□□□ -0.86
CUX1-204ENST00000393824 DLK1P80370 383 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 C1orf140Q5VVS0 124 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 ZNF664Q8N3J9 261 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 FGGYQ96C11 551 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 FOXN4Q96NZ1 517 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 ADOQ96SZ5 270 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 COPS7AQ9UBW8 275 aa9.71□□□□□ -0.86
CUX1-204ENST00000393824 A0A1W2PQD3 144 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 A8MVM7 634 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 PHOX2AO14813 284 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 SRP19P09132 144 aaKnown RBP9.7□□□□□ -0.86
CUX1-204ENST00000393824 GZMBP10144 247 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 PTGER4P35408 488 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 TMEM50BP56557 158 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 GAGE1Q13065 139 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 SEMA6DQ8NFY4 1073 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 JSRP1Q96MG2 331 aaPredicted RBP9.7□□□□□ -0.86
CUX1-204ENST00000393824 PITPNC1Q9UKF7 332 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 LSM5Q9Y4Y9 91 aaKnown RBP9.7□□□□□ -0.86
CUX1-204ENST00000393824 URB1O60287 2271 aaKnown RBP9.7□□□□□ -0.86
CUX1-204ENST00000393824 FRG2CA6NGY1 282 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 A6NIZ1 184 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 GPR137BO60478 399 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 WISP1O95388 367 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 IFNA21P01568 189 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 CTLA4P16410 223 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 OR3A2P47893 321 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 MMP16P51512 607 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 TAS2R46P59540 309 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 RAP1BP61224 184 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 FOXC1Q12948 553 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 DNM1P34Q6PK57 102 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 SLC35E3Q7Z769 313 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 GPR137CQ8N3F9 429 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 IL22RA1Q8N6P7 574 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 SLC25A36Q96CQ1 311 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 TVP23CQ96ET8 276 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 URGCP-MRPS24S4R325 110 aa9.7□□□□□ -0.86
CUX1-204ENST00000393824 DOCK10Q96BY6 2186 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 B4DEV8 164 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 FTCDNL1E5RQL4 147 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 P2RY10O00398 339 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 SOCS1O15524 211 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 NPIPB7O75200 414 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 RAD51DO75771 328 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 OR2J2O76002 312 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 OR5H8P0DN80 308 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 LIFP15018 202 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 AMY2BP19961 511 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 PGCP20142 388 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 SERPINA2P20848 420 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 SP5Q6BEB4 398 aaPredicted RBP9.69□□□□□ -0.86
CUX1-204ENST00000393824 ZNF429Q86V71 674 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms