RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SIRT7Q9NRC8 400 aa8.65□□□□□ -1.02
COL17A1-203ENST00000393211 LYRM2Q9NU23 88 aaPredicted RBP8.65□□□□□ -1.02
COL17A1-203ENST00000393211 TMEM38BQ9NVV0 291 aa8.65□□□□□ -1.02
COL17A1-203ENST00000393211 DKKL1Q9UK85 242 aa8.65□□□□□ -1.02
COL17A1-203ENST00000393211 ST3GAL6Q9Y274 331 aa8.65□□□□□ -1.02
COL17A1-203ENST00000393211 LAMA3Q16787 3333 aa8.65□□□□□ -1.02
COL17A1-203ENST00000393211 IGKV1-12A0A0C4DH73 117 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 ZNF816-ZNF321PA0A0X1KG74 233 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 hCG_38984A0A1B0GV85 526 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 OR2C1O95371 312 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 IGKV1D-12P01611 117 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 HBE1P02100 147 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 LCATP04180 440 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 HSPB1P04792 205 aaKnown RBP8.65□□□□□ -1.03
COL17A1-203ENST00000393211 OR8U8P0C7N1 319 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 FGF5P12034 268 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 MYF5P13349 255 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 AADACP22760 399 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 SSR4P51571 173 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 CLDN15P56746 228 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 RAB2AP61019 212 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 OR8G1Q15617 311 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 RIPPLY2Q5TAB7 128 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 RBMS3Q6XE24 437 aaKnown RBP8.65□□□□□ -1.03
COL17A1-203ENST00000393211 TMEM182Q6ZP80 229 aaPredicted RBP8.65□□□□□ -1.03
COL17A1-203ENST00000393211 SLC16A13Q7RTY0 426 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 SAXO1Q8IYX7 474 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 FAM24BQ8N5W8 94 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 OR10G4Q8NGN3 311 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 OR2G3Q8NGZ4 309 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 SPSB4Q96A44 273 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 ISOC2Q96AB3 205 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 RBMXL1Q96E39 390 aaKnown RBP8.65□□□□□ -1.03
COL17A1-203ENST00000393211 IMMP1LQ96LU5 166 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 UCN2Q96RP3 112 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 PHF7Q9BWX1 381 aaPredicted RBP8.65□□□□□ -1.03
COL17A1-203ENST00000393211 SH3BGRL3Q9H299 93 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 FBXO7Q9Y3I1 522 aa8.65□□□□□ -1.03
COL17A1-203ENST00000393211 IGHV1-45A0A0A0MS14 117 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 A0A0J9YW62 118 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 hCG_1809904A0A1W2PP81 198 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 A0A1W2PPE3 182 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 A0A1W2PR64 198 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 A0A1W2PRV1 198 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 LINC00587B1AMM8 73 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 B4DEV8 164 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 RPL36A-HNRNPH2H7BZ11 118 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 CTXN2P0C2S0 81 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 HOXA5P20719 270 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 ATP6V0CP27449 155 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 PPP1CCP36873 323 aaKnown RBP8.64□□□□□ -1.03
COL17A1-203ENST00000393211 FHITP49789 147 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 RPS23P62266 143 aaKnown RBP8.64□□□□□ -1.03
COL17A1-203ENST00000393211 VAMP2P63027 116 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 CCL7P80098 99 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 IL11RAQ14626 422 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 PIGYQ3MUY2 71 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 NRN1LQ496H8 165 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 ZNF506Q5JVG8 444 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 TSPO2Q5TGU0 170 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 ADAM5Q6NVV9 412 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 CLEC9AQ6UXN8 241 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 ZNF695Q8IW36 515 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 SPEM1Q8N4L4 309 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 OR2AE1Q8NHA4 323 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 MUCL1Q96DR8 90 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 CCDC74BQ96LY2 380 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 TP53RKQ96S44 253 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 PROK2Q9HC23 129 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 UBE2J1Q9Y385 318 aaPredicted RBP8.64□□□□□ -1.03
COL17A1-203ENST00000393211 MYO9BQ13459 2157 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 SPAG17Q6Q759 2223 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 KIAA1549Q9HCM3 1950 aa8.64□□□□□ -1.03
COL17A1-203ENST00000393211 IGHV3-15A0A0B4J1V0 119 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TRAV1-1A0A0B4J248 108 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 A0A1W2PQM1 296 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 IGSF23A1L1A6 192 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 NKX2-6A6NCS4 301 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TGOLN2O43493 480 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 CLN5O75503 358 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 C1QL1O75973 258 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TK1P04183 234 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SRP19P09132 144 aaKnown RBP8.63□□□□□ -1.03
COL17A1-203ENST00000393211 OR13C7P0DN81 318 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 CCL3P10147 92 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SLC25A6P12236 298 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 NQO2P16083 231 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SRD5A2P31213 254 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 ID3Q02535 119 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TLE4Q04727 773 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TRIM61Q5EBN2 209 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 ZNF774Q6NX45 483 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SPSB3Q6PJ21 355 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SLC35E3Q7Z769 313 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 SELENOHQ8IZQ5 122 aaKnown RBP8.63□□□□□ -1.03
COL17A1-203ENST00000393211 TMEM252Q8N6L7 170 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 OR13D1Q8NGV5 346 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 OR11L1Q8NGX0 322 aa8.63□□□□□ -1.03
COL17A1-203ENST00000393211 C20orf24Q9BUV8 137 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms