RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRSS54Q6PEW0 395 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 OR2W5A6NFC9 320 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 TBX19O60806 448 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 SLC25A40Q8TBP6 338 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 MYOZ3Q8TDC0 251 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 Q8WTZ3 238 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 WNT16Q9UBV4 365 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 PCDHGA9Q9Y5G4 932 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 WNT1P04628 370 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 P2RY1P47900 373 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 PGFP49763 221 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 FGF8P55075 233 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 RAB32Q13637 225 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 ST3GAL2Q16842 350 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 LPAR3Q9UBY5 353 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 RREB1Q92766 1687 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MIA3Q5JRA6 1907 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 CD40P25942 277 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 DLX1P56177 255 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 DHRS13Q6UX07 377 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 TBC1D26Q86UD7 250 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 NUDT16L1Q9BRJ7 211 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 CNTD2Q9H8S5 307 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 SKP2Q13309 424 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 LBHQ53QV2 105 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF793Q6ZN11 406 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MUC20Q8N307 709 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 OR6X1Q8NH79 312 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 IFT22Q9H7X7 185 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 DOCK1Q14185 1865 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MFNGO00587 321 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 PPM1DO15297 605 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MPC2O95563 127 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MGPP08493 103 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 KIR2DL1P43626 348 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 KIR2DL2P43627 348 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MRPS11P82912 194 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 TRIP6Q15654 476 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 GPX7Q96SL4 187 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 ELOA3CA0A087WX78 387 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 RBFOX3A6NFN3 312 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 CES1P1Q9UKY3 287 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 IGHV5-51A0A0C4DH38 117 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 MFSD2BA6NFX1 497 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 FAM157AC9JC47 383 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 DNPH1O43598 174 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 C1orf210Q8IVY1 113 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 PTP4A1Q93096 173 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 WDFY2Q96P53 400 aa11.34□□□□□ -0.59
CCDC88C-204ENST00000389857 ACTL6AO96019 429 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 FAHD2BQ6P2I3 314 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 D2HGDHQ8N465 521 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 GPBAR1Q8TDU6 330 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 FAHD2AQ96GK7 314 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TAF1P21675 1872 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 SULT1A1P50225 295 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 B4GALNT1Q00973 533 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 RND1Q92730 232 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TNFRSF12AQ9NP84 129 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 ASCL3Q9NQ33 180 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 HAND1O96004 215 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 HLA-DRB3P79483 266 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 LINC00596Q86U02 117 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 OR1L6Q8NGR2 347 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 ANGPTL4Q9BY76 406 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 ANXA10Q9UJ72 324 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 RNF165Q6ZSG1 346 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 PRSS42Q7Z5A4 293 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TBX21Q9UL17 535 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 PDE6DO43924 150 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 MELTFP08582 738 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 CRYBB2P43320 205 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 CLDN18P56856 261 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 FAM74A3Q4VXF1 159 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 SLC2A9Q9NRM0 540 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 MYO5AQ9Y4I1 1855 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 B4DEV8 164 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TNFSF14O43557 240 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TTRP02766 147 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 CCL2P13500 99 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 ERVS71-1P61550 626 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 IL22RA2Q969J5 263 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 MYEOVQ96EZ4 313 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 ABHD14AQ9BUJ0 271 aa11.33□□□□□ -0.6
CCDC88C-204ENST00000389857 TRAV34A0A0B4J273 112 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 A6NDN8 102 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 Q6ZS52 159 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 SAP30LQ9HAJ7 183 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 CTSDP07339 412 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 FOXO1Q12778 655 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 C10orf113Q5VZT2 155 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 FAM219AQ8IW50 185 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 OR10G8Q8NGN5 311 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 IGHV1OR21-1A0A087WYE8 117 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 C11orf94C9JXX5 98 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 RHBDL1O75783 438 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 SRSF9Q13242 221 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 HLA-DRB5Q30154 266 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF683Q8IZ20 524 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 HEXA-AS1Q9H8Q6 139 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms