RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 RRP8O43159 456 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 HPNP05981 417 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 PFN1P07737 140 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 GALNSP34059 522 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 ELLP55199 621 aaPredicted RBP12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 C1orf189Q5VU69 101 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 LRTM2Q8N967 370 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 OR51T1Q8NGJ9 327 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 OR2AJ1Q8NGZ0 328 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 RNF133Q8WVZ7 376 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 RERGQ96A58 199 aaPredicted RBP12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 FAAP24Q9BTP7 215 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 ANGPTL4Q9BY76 406 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 NCOR1P1Q9H4R4 102 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 FAM60AQ9NP50 221 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 P4HTMQ9NXG6 502 aa12.79□□□□□ -0.36
VPS9D1-201ENST00000389386 ZNF878C9JN71 531 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 PITX3O75364 302 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 CD55P08174 381 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 ZNF20P17024 532 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 TRA2AQ13595 282 aaKnown RBP eCLIP12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 KIR2DS3Q14952 304 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 ZNF66Q6ZN08 573 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 RABEPKQ7Z6M1 372 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 OR2C3Q8N628 320 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 TMEM171Q8WVE6 324 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 ZFYVE21Q9BQ24 234 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 C11orf1Q9H5F2 150 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 NAA60Q9H7X0 242 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 LPAR2Q9HBW0 351 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 IGSF23A1L1A6 192 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 B4DGG1 531 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 ZNF732B4DXR9 585 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 HSPA12AO43301 675 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 HBE1P02100 147 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 IRF2P14316 349 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 PECRQ9BY49 303 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 LIME1Q9H400 295 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 FKBP11Q9NYL4 201 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 LRFN1Q9P244 771 aa12.78□□□□□ -0.36
VPS9D1-201ENST00000389386 PCDH15Q96QU1 1955 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 WISP1O95388 367 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 SCGB1D1O95968 90 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 MMP9P14780 707 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 BLVRBP30043 206 aaPredicted RBP12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 GPR3P46089 330 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 MRPS21P82921 87 aaKnown RBP12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 GNMTQ14749 295 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 TMEM123Q8N131 208 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 OR51E1Q8TCB6 317 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 SLC7A11Q9UPY5 501 aa12.77□□□□□ -0.36
VPS9D1-201ENST00000389386 PPP5D1E7EU14 171 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 DXOO77932 396 aaKnown RBP12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 BRS3P32247 399 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 TLE4Q04727 773 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 WDR25Q64LD2 544 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 ETFRF1Q6IPR1 90 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 C16orf54Q6UWD8 224 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 ZNF705AQ6ZN79 300 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 LIAT1Q6ZQX7 453 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 TMEM170AQ8WVE7 144 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 FBRSQ9HAH7 460 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 ZNF701Q9NV72 531 aaPredicted RBP12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 MMP17Q9ULZ9 603 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 SPAG17Q6Q759 2223 aa12.77□□□□□ -0.37
VPS9D1-201ENST00000389386 B4E171 279 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 CA11O75493 328 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 TNFP01375 233 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 SELEP16581 610 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 FMODQ06828 376 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 TGIF2LYQ8IUE0 185 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 OR4D5Q8NGN0 318 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 RTN4IP1Q8WWV3 396 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 GNG13Q9P2W3 67 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 LAMP3Q9UQV4 416 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 ZDBF2Q9HCK1 2354 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 TRAV1-1A0A0B4J248 108 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 IFNL4K9M1U5 179 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 CTSEP14091 401 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 RAC2P15153 192 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 GZMHP20718 246 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 OMGP23515 440 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 SLC37A1P57057 533 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 TSPO2Q5TGU0 170 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 FBXW9Q5XUX1 488 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 CMTM1Q8IZ96 169 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 METTL27Q8N6F8 245 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 GNPNAT1Q96EK6 184 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 OR10A5Q9H207 317 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 UNC13CQ8NB66 2214 aa12.76□□□□□ -0.37
VPS9D1-201ENST00000389386 SERPINE3A8MV23 424 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 SCDO00767 359 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 HPRT1P00492 218 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 MT-ATP6P00846 226 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 IGHMP01871 453 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 GLI4P10075 376 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 KLHL24Q6TFL4 600 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 NEK7Q8TDX7 302 aa12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 MSI2Q96DH6 328 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-201ENST00000389386 CCDC3Q9BQI4 270 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms