RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 NELFAQ9H3P2 528 aa12.25□□□□□ -0.45
CLCNKA-202ENST00000375692 SEMA5BQ9P283 1151 aa12.25□□□□□ -0.45
CLCNKA-202ENST00000375692 STRAPQ9Y3F4 350 aaKnown RBP12.25□□□□□ -0.45
CLCNKA-202ENST00000375692 K7N7A8 449 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 FBP1P09467 338 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 HEPN1Q6WQI6 88 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 C5orf24Q7Z6I8 188 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 ZFP62Q8NB50 900 aaPredicted RBP12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 MALSU1Q96EH3 234 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 UCN2Q96RP3 112 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 FREM2Q5SZK8 3169 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 SLC33A1O00400 549 aaPredicted RBP12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 ATXN7O15265 892 aaPredicted RBP12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 ONECUT2O95948 504 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 CHATP28329 748 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 EWSR1Q01844 656 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 KIAA0141Q14154 515 aaPredicted RBP12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 HAGHQ16775 308 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 ZNF343Q6P1L6 599 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 SLC35G3Q8N808 338 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 CCDC74BQ96LY2 380 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 YPEL4Q96NS1 127 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 OR6C1Q96RD1 312 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 TP53RKQ96S44 253 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 TMPRSS5Q9H3S3 457 aa12.24□□□□□ -0.45
CLCNKA-202ENST00000375692 DMXL1Q9Y485 3027 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 IFITM10A6NMD0 228 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 IFNA17P01571 189 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 RHBDD2Q6NTF9 364 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 CDPF1Q6NVV7 123 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 RABEPKQ7Z6M1 372 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 OR10AD1Q8NGE0 317 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 OR5L2Q8NGL0 311 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 OR2G3Q8NGZ4 309 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 GPHA2Q96T91 129 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 IGLV3-32A0A0A0MS00 114 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 NKX2-6A6NCS4 301 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 CDX4O14627 284 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 YKT6O15498 198 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 GALR2O43603 387 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 RAB5CP51148 216 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 IL13RA2Q14627 380 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 PLA2G2CQ5R387 149 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 Q6ZPA2 131 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 LGI3Q8N145 548 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 SUCNR1Q9BXA5 334 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 MAGT1Q9H0U3 335 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 OCIAD1Q9NX40 245 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 HSF4Q9ULV5 492 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 URGCP-MRPS24S4R325 110 aa12.23□□□□□ -0.45
CLCNKA-202ENST00000375692 OTOGLQ3ZCN5 2332 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 IGKV1-12A0A0C4DH73 117 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 NDUFS6O75380 124 aaKnown RBP12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 ZFAND5O76080 213 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 IGKV1D-12P01611 117 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 CD63P08962 238 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 ATP6V0CP27449 155 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 HTR5AP47898 357 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 NDUFA6P56556 154 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 EIF3IQ13347 325 aaKnown RBP12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 C9orf152Q5JTZ5 239 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 FBXL14Q8N1E6 418 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 LRTM2Q8N967 370 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 NAT6Q93015 286 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 BOD1Q96IK1 185 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 RASL10BQ96S79 203 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 TOLLIPQ9H0E2 274 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 IGLV3-12A0A075B6K2 115 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 IGSF23A1L1A6 192 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 RBFOX3A6NFN3 312 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 H0YL77 283 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 H3BQ15 152 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 DHHO43323 396 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 PATE4P0C8F1 98 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 AADACP22760 399 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 OTX1P32242 354 aaPredicted RBP12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 SPSB3Q6PJ21 355 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 RAB39BQ96DA2 213 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 MUCL1Q96DR8 90 aa12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 PAPOLGQ9BWT3 736 aaKnown RBP12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 AKIRIN1Q9H9L7 192 aaPredicted RBP12.22□□□□□ -0.45
CLCNKA-202ENST00000375692 RIF1Q5UIP0 2472 aaKnown RBP12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 ZNF724A8MTY0 619 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 G3V3Y1 287 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 DTYMKP23919 212 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 RND3P61587 244 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 RAB1AP62820 205 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 GNMTQ14749 295 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 PYY3Q5JQD4 70 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 OR2B11Q5JQS5 317 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 OR2C3Q8N628 320 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 OR4D5Q8NGN0 318 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 TMEM171Q8WVE6 324 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 ZNF700Q9H0M5 742 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 ZFHX2Q9C0A1 2572 aaPredicted RBP12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 KNTC1P50748 2209 aa12.21□□□□□ -0.45
CLCNKA-202ENST00000375692 NXPH3O95157 252 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 CXCL1P09341 107 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 HOXA5P20719 270 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 TAGLN2P37802 199 aaKnown RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms