RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 POC1AQ8NBT0 407 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 SPACA1Q9HBV2 294 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 HES4Q9HCC6 221 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 NGBQ9NPG2 151 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 CA10Q9NS85 328 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 ZSCAN5BA6NJL1 495 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 PMP2P02689 132 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 IL5P05113 134 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 FCGR3AP08637 254 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 AMY2BP19961 511 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 TAS2R46P59540 309 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 NKPD1Q17RQ9 610 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ATAD3CQ5T2N8 411 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ARRDC1Q8N5I2 433 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 MRPL24Q96A35 216 aaKnown RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 SYT3Q9BQG1 590 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 MRPL37Q9BZE1 423 aaKnown RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ZNF442Q9H7R0 627 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ZNF701Q9NV72 531 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 FAM90A27PA6NNH2 459 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ATXN7O15265 892 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 CCNKO75909 580 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 CSN2P05814 226 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 GLAP06280 429 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 MRPS15P82914 257 aaKnown RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 IKZF1Q13422 519 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ZNF146Q15072 292 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 SLC36A1Q7Z2H8 476 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 OR5AP2Q8NGF4 316 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 OR5H2Q8NGV7 314 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 GTF3AQ92664 365 aaKnown RBP13.1□□□□□ -0.31
LIMS1-202ENST00000338045 MRGPRFQ96AM1 343 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ST6GAL2Q96JF0 529 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 C12orf4Q9NQ89 552 aa13.1□□□□□ -0.31
LIMS1-202ENST00000338045 ACACBO00763 2458 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 IGKV1D-8A0A087WSZ0 117 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 UBE2QL1A1L167 161 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 IFNA6P05013 189 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 ANXA7P20073 488 aaKnown RBP13.09□□□□□ -0.31
LIMS1-202ENST00000338045 DUSP1P28562 367 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 SELENOVP59797 346 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 SORDQ00796 357 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 MPPED2Q15777 294 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 ST3GAL2Q16842 350 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 METTL11BQ5VVY1 283 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 PRAMEF6Q5VXH4 476 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 Q6P435 159 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 WDR82Q6UXN9 313 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 GLDNQ6ZMI3 551 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-202ENST00000338045 OR2Z1Q8NG97 314 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 MAFIPQ8WZ33 124 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 DYRK2Q92630 601 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 ALX4Q9H161 411 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-202ENST00000338045 OR51J1Q9H342 316 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 ADGRG4Q8IZF6 3080 aa13.09□□□□□ -0.31
LIMS1-202ENST00000338045 TRAV24A0A0B4J272 114 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 IGHV3-64DA0A0J9YX35 117 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 PLSCR5A0PG75 271 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 CDSNQ15517 529 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 SCGB2B2Q4G0G5 96 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 NCMAPQ5T1S8 102 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 SLC22A25Q6T423 547 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF600Q6ZNG1 722 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 Q6ZPA2 131 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF826PQ6ZT77 177 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 OVCH2Q7RTZ1 564 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 BEX2Q9BXY8 128 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 BEX1Q9HBH7 125 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 MYOZ1Q9NP98 299 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-202ENST00000338045 TAAR3PQ9P1P4 343 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ANXA10Q9UJ72 324 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ERRFI1Q9UJM3 462 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-202ENST00000338045 COL6A6A6NMZ7 2263 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 NKX2-6A6NCS4 301 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 CEACAM18A8MTB9 384 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 C3orf80F5H4A9 247 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 NXPH2O95156 264 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 NAPSAO96009 420 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 HPXP02790 462 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 VSIG10L2P0DP72 767 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 CFHR2P36980 270 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 SRSF7Q16629 238 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIMS1-202ENST00000338045 SPIN3Q5JUX0 258 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 LHFPL1Q86WI0 220 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ZDHHC22Q8N966 263 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 SUMF2Q8NBJ7 301 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ELMOD3Q96FG2 381 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF221Q9UK13 617 aa13.08□□□□□ -0.32
LIMS1-202ENST00000338045 PLCE1Q9P212 2302 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 NBASA2RRP1 2371 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 TMEM82A0PJX8 343 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 A6NLC8 198 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 OR2AT4A6NND4 320 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 SNRPGP15A8MWD9 76 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 MCRIP1C9JLW8 97 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 RLN1P04808 185 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 OR3A3P47888 321 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 ADIPOQQ15848 244 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 CHRFAM7AQ494W8 412 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 ATPAF1Q5TC12 328 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms